Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 98.32 | 99.03 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 97.6 | 97.6 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 50.72 | 94.2 |
| Os04t0445600-00 | Rice | nucleus | 72.84 | 72.66 |
| Zm00001d025514_P001 | Maize | nucleus | 67.79 | 71.94 |
| EES12241 | Sorghum | nucleus | 69.95 | 71.32 |
| Zm00001d003549_P001 | Maize | nucleus | 64.18 | 69.35 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 58.89 | 58.89 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 35.34 | 40.38 |
| KRH06239 | Soybean | nucleus | 35.34 | 39.73 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 31.97 | 39.0 |
| CDY33246 | Canola | nucleus | 28.61 | 38.89 |
| KRH47662 | Soybean | nucleus, plastid | 34.38 | 38.86 |
| CDY39099 | Canola | nucleus | 29.33 | 38.49 |
| CDY39101 | Canola | nucleus, plastid | 27.88 | 38.03 |
| Bra021536.1-P | Field mustard | nucleus | 27.64 | 37.58 |
| Bra021534.1-P | Field mustard | nucleus, plastid | 27.64 | 37.1 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 32.21 | 37.02 |
| Solyc03g122030.1.1 | Tomato | nucleus | 31.97 | 36.64 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 31.97 | 35.66 |
| CDX75751 | Canola | nucleus | 31.25 | 34.95 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 33.17 | 34.16 |
| TraesCS3B01G305100.1 | Wheat | nucleus | 25.72 | 33.54 |
| Bra037960.1-P | Field mustard | nucleus, plastid | 24.04 | 33.22 |
| CDY61477 | Canola | nucleus, plastid | 23.56 | 32.56 |
| CDY02487 | Canola | nucleus, plastid | 23.8 | 32.14 |
| AT3G14180.1 | Thale cress | nucleus | 33.41 | 31.38 |
| TraesCS1B01G420500.1 | Wheat | nucleus | 26.2 | 30.62 |
| Bra014370.1-P | Field mustard | nucleus | 24.52 | 30.45 |
| CDY08216 | Canola | nucleus | 23.8 | 30.18 |
| AT1G54060.1 | Thale cress | nucleus | 26.2 | 28.46 |
| CDY26148 | Canola | nucleus, plastid | 23.32 | 27.17 |
| CDY51405 | Canola | nucleus | 8.17 | 26.77 |
| TraesCS3B01G274700.1 | Wheat | nucleus, plastid | 19.23 | 25.64 |
| CDY33093 | Canola | cytosol, plastid | 24.76 | 23.57 |
| Bra030909.1-P | Field mustard | nucleus | 7.21 | 23.44 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G332100.1 | EnsemblPlantsGene:TraesCS2B01G332100 | ncoils:Coil | PANTHER:PTHR31307 | PANTHER:PTHR31307:SF12 | PFAM:PF13837 |
| SEG:seg | MapMan:15.5.20 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:475126694..475127944
Molecular Weight (calculated)
44933.4 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.922
Length
416 amino acids
Sequence
(BLAST)
(BLAST)
001: MDDDDNSPSP SLSPASSSPL PVASALPVAD PVTVASAPPG GPLTLALPIQ KHGSYPSHGG SGGGGGGGGG REDAWSEGAT SALIDAWGER FVALGRGSLR
101: HPQWQEVAEA VSSRDNYSKA PKSDVQCKNR IDTLKKKYKI ERAKPVSSWQ FYDRLDVLLA PTYNQKPAAH PNGRNAVPTA LRAGFPQRSR TPLMPASAPV
201: KRRAPSPELS ASSESSDGFP PEPALQAANG KRRRTDEGRV DGFSGGDRSQ GMRELAQAIR RLGEAYERVE TAKLEQAAEM ERQRLDFARE LESQRVQFFL
301: NTQKELSQGK SHISPAAAAS HSQVGAATVG GSSRRMASVP DSTSRRMAPF PDARTSSNHH DRYRASDGSR HHHRPALRPH YQYHENNMAD SAAASDGEQS
401: DEEEEEEDDD NEEESQ
101: HPQWQEVAEA VSSRDNYSKA PKSDVQCKNR IDTLKKKYKI ERAKPVSSWQ FYDRLDVLLA PTYNQKPAAH PNGRNAVPTA LRAGFPQRSR TPLMPASAPV
201: KRRAPSPELS ASSESSDGFP PEPALQAANG KRRRTDEGRV DGFSGGDRSQ GMRELAQAIR RLGEAYERVE TAKLEQAAEM ERQRLDFARE LESQRVQFFL
301: NTQKELSQGK SHISPAAAAS HSQVGAATVG GSSRRMASVP DSTSRRMAPF PDARTSSNHH DRYRASDGSR HHHRPALRPH YQYHENNMAD SAAASDGEQS
401: DEEEEEEDDD NEEESQ
001: METTPETQSK THRLPAGRED WWSEDATATL IEAWGDRYVN LNRGNLRQND WKEVADAVNS SHGNGRPKTD VQCKNRIDTL KKKYKTEKAK PLSNWCFFDR
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
101: LDFLIGPVMK KSSGAVVKSA LMNPNLNPTG SKSTGSSLDD DDDDDDDDEE DDDDAGDWGF VVRKHRKVED VDSSEGSAFR ELARSILKLG EAFERIEGKK
201: QQMMIELEKQ RMEVAKELEL QRMNMLMEMQ LELEKSKLGK RRAASGKKL
Arabidopsis Description
AT3g11100/F11B9_105 [Source:UniProtKB/TrEMBL;Acc:Q8VZI9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.