Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G091800.1 | Wheat | plastid | 96.05 | 96.05 |
| HORVU5Hr1G020880.1 | Barley | plastid | 94.74 | 94.74 |
| TraesCS5A01G080800.1 | Wheat | plastid | 93.42 | 92.21 |
| Os12t0573600-01 | Rice | nucleus | 61.84 | 75.81 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 44.74 | 58.62 |
| Zm00001d041535_P001 | Maize | plastid | 51.32 | 58.21 |
| KXG23778 | Sorghum | plastid | 60.53 | 55.42 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 47.37 | 52.17 |
| GSMUA_Achr10P... | Banana | nucleus | 52.63 | 51.95 |
| TraesCS3B01G393600.1 | Wheat | nucleus | 46.05 | 49.3 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 47.37 | 45.57 |
| TraesCS1B01G292500.1 | Wheat | nucleus, plastid | 35.53 | 45.0 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 34.21 | 36.62 |
| Bra005022.1-P | Field mustard | plastid | 43.42 | 34.38 |
| CDY69313 | Canola | plastid | 42.11 | 33.33 |
| CDY20471 | Canola | plastid | 42.11 | 33.33 |
| CDX74841 | Canola | plastid | 42.11 | 33.33 |
| KRH15084 | Soybean | plastid | 35.53 | 33.33 |
| AT2G39705.1 | Thale cress | plastid | 38.16 | 33.33 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 35.53 | 32.53 |
| TraesCS4B01G208100.1 | Wheat | cytosol, plastid | 42.11 | 32.32 |
| KRH73051 | Soybean | plastid | 35.53 | 32.14 |
| CDY07025 | Canola | plastid | 34.21 | 31.71 |
| CDX93246 | Canola | plastid | 34.21 | 31.71 |
| AT3G55515.1 | Thale cress | nucleus | 31.58 | 30.38 |
| Bra017058.1-P | Field mustard | plastid | 34.21 | 28.89 |
| KRG93907 | Soybean | mitochondrion | 26.32 | 27.03 |
| CDY02946 | Canola | nucleus, plastid | 28.95 | 25.0 |
| Bra014737.1-P | Field mustard | nucleus | 27.63 | 23.86 |
| CDX76087 | Canola | nucleus | 27.63 | 23.86 |
| KRG97895 | Soybean | cytosol, plastid | 34.21 | 23.64 |
| CDY41215 | Canola | nucleus | 25.0 | 22.35 |
| Bra007172.1-P | Field mustard | nucleus | 25.0 | 21.59 |
| CDY40235 | Canola | nucleus | 25.0 | 21.59 |
| KRH30989 | Soybean | plastid | 30.26 | 21.1 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G085600.1 | EnsemblPlantsGene:TraesCS5B01G085600 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 | PFAM:PF08137 |
| SEG:seg | MapMan:11.10.1.6.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5B:-:108551154..108551384
Molecular Weight (calculated)
8403.4 Da
IEP (calculated)
11.936
GRAVY (calculated)
-0.387
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMCMDDQWK LSKKGSRRSA AVAPAVATGS PVGVKGRTSR GSGRSVPGRL ASLAKQQRAR FYIMRRCVTM LVCWRD
1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS
Arabidopsis Description
RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.