Factsheet for VIT_13s0019g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15084	Soybean	plastid	67.47	69.14
KRH73051	Soybean	plastid	65.06	64.29
GSMUA_Achr6P34070_001	Banana	cytosol	43.37	62.07
PGSC0003DMT400016270	Potato	nucleus, plastid	50.6	59.15
TraesCS1B01G292500.1	Wheat	nucleus, plastid	38.55	53.33
Os12t0573600-01	Rice	nucleus	37.35	50.0
GSMUA_Achr10P...	Banana	nucleus	44.58	48.05
Os01t0844200-01	Rice	mitochondrion	43.37	47.37
GSMUA_Achr7P10600_001	Banana	nucleus	45.78	46.34
KXG33681	Sorghum	cytosol	37.35	46.27
GSMUA_Achr2P16410_001	Banana	nucleus	43.37	45.57
TraesCS3A01G361200.1	Wheat	cytosol, mitochondrion, nucleus	39.76	45.21
TraesCS1A01G283300.1	Wheat	mitochondrion, nucleus	32.53	45.0
KXG23778	Sorghum	plastid	44.58	44.58
GSMUA_Achr9P03880_001	Banana	nucleus	45.78	44.19
TraesCS3B01G393600.1	Wheat	nucleus	37.35	43.66
GSMUA_Achr9P28300_001	Banana	nucleus	36.14	43.48
HORVU1Hr1G072580.1	Barley	nucleus, plastid	37.35	42.47
Zm00001d012414_P001	Maize	cytosol	37.35	41.89
Zm00001d041535_P001	Maize	plastid	33.73	41.79
GSMUA_Achr6P15210_001	Banana	cytosol, plastid	42.17	41.18
Zm00001d042900_P001	Maize	plastid	37.35	40.79
KXG23779	Sorghum	nucleus	34.94	40.28
Zm00001d030750_P001	Maize	nucleus, plastid	34.94	39.73
AT3G55515.1	Thale cress	nucleus	37.35	39.24
Os03t0272900-02	Rice	cytosol	44.58	37.76
CDX76087	Canola	nucleus	39.76	37.5
Bra014737.1-P	Field mustard	nucleus	39.76	37.5
TraesCS5D01G091800.1	Wheat	plastid	33.73	36.84
CDY41215	Canola	nucleus	37.35	36.47
Zm00001d028598_P001	Maize	cytosol	43.37	36.36
CDY02946	Canola	nucleus, plastid	38.55	36.36
TraesCS5A01G080800.1	Wheat	plastid	33.73	36.36
HORVU5Hr1G020880.1	Barley	plastid	32.53	35.53
TraesCS5B01G085600.1	Wheat	plastid	32.53	35.53
Zm00001d047820_P001	Maize	cytosol, mitochondrion, nucleus	42.17	35.35
TraesCS4D01G209000.1	Wheat	cytosol	42.17	35.35
TraesCS4B01G208100.1	Wheat	cytosol, plastid	42.17	35.35
TraesCS4A01G096300.1	Wheat	cytosol	42.17	35.35
CDY40235	Canola	nucleus	37.35	35.23
Bra007172.1-P	Field mustard	nucleus	37.35	35.23
OQU92832	Sorghum	cytosol, mitochondrion, plastid	44.58	34.91
HORVU4Hr1G059950.1	Barley	cytosol	42.17	34.31
Os05t0458200-01	Rice	nucleus	32.53	31.03
HORVU3Hr1G086090.1	Barley	cytosol, plastid	38.55	29.91
GSMUA_Achr5P28710_001	Banana	plastid	45.78	28.15
GSMUA_Achr11P...	Banana	cytosol	42.17	28.0

Protein Annotations

EntrezGene:100263265	wikigene:100263265	MapMan:11.10.1.6.1	EMBL:AM458632	ProteinID:CAN67911	ProteinID:CAN67911.1
ProteinID:CCB56331	ProteinID:CCB56331.1	InterPro:DVL	UniProt:F6HNW1	EMBL:FN595998	EntrezGene:LOC100263265
wikigene:LOC100263265	PFAM:PF08137	PANTHER:PTHR33102	PANTHER:PTHR33102:SF9	UniParc:UPI000198489F	ArrayExpress:VIT_13s0019g01890
EnsemblPlantsGene:VIT_13s0019g01890	EnsemblPlants:VIT_13s0019g01890.t01	unigene:Vvi.18129	RefSeq:XP_002283227	RefSeq:XP_002283227.1	SEG:seg

Description

No Description!

Coordinates

chr13:+:3227777..3228605

Molecular Weight (calculated)

9549.5 Da

IEP (calculated)

10.863

GRAVY (calculated)

-0.583

Length

83 amino acids

Sequence
(BLAST)

1: MASTATAAAA AAPQFYLDEK WKLSKKEGSR SRSSTSPLMR NSSQRRCSFT RKCASLVKEQ RARFYIVRRC VTMLICWREY SDS

Best Arabidopsis Sequence Match ( AT2G39705.1 )
(BLAST)

1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS

Arabidopsis Description

RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.