Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d030750_P001 | Maize | nucleus, plastid | 79.03 | 67.12 |
| KXG23779 | Sorghum | nucleus | 74.19 | 63.89 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 59.68 | 63.79 |
| TraesCS5D01G091800.1 | Wheat | plastid | 77.42 | 63.16 |
| TraesCS5B01G085600.1 | Wheat | plastid | 75.81 | 61.84 |
| TraesCS5A01G080800.1 | Wheat | plastid | 75.81 | 61.04 |
| HORVU5Hr1G020880.1 | Barley | plastid | 74.19 | 60.53 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 66.13 | 59.42 |
| GSMUA_Achr10P... | Banana | nucleus | 69.35 | 55.84 |
| KXG23778 | Sorghum | plastid | 72.58 | 54.22 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 58.06 | 45.57 |
| Os01t0844200-01 | Rice | mitochondrion | 54.84 | 44.74 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 46.77 | 40.85 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 50.0 | 37.35 |
| KRH15084 | Soybean | plastid | 48.39 | 37.04 |
| KRH73051 | Soybean | plastid | 50.0 | 36.9 |
| Os05t0458200-01 | Rice | nucleus | 51.61 | 36.78 |
| Os03t0272900-02 | Rice | cytosol | 58.06 | 36.73 |
| CDX93246 | Canola | plastid | 48.39 | 36.59 |
| CDY07025 | Canola | plastid | 48.39 | 36.59 |
| Bra005022.1-P | Field mustard | plastid | 53.23 | 34.38 |
| AT3G55515.1 | Thale cress | nucleus | 43.55 | 34.18 |
| CDX74841 | Canola | plastid | 51.61 | 33.33 |
| AT2G39705.1 | Thale cress | plastid | 46.77 | 33.33 |
| CDY69313 | Canola | plastid | 51.61 | 33.33 |
| CDY20471 | Canola | plastid | 51.61 | 33.33 |
| Bra017058.1-P | Field mustard | plastid | 46.77 | 32.22 |
| KRG93907 | Soybean | mitochondrion | 37.1 | 31.08 |
| CDY41215 | Canola | nucleus | 37.1 | 27.06 |
| KRG97895 | Soybean | cytosol, plastid | 46.77 | 26.36 |
| Bra007172.1-P | Field mustard | nucleus | 37.1 | 26.14 |
| CDY40235 | Canola | nucleus | 37.1 | 26.14 |
| CDY02946 | Canola | nucleus, plastid | 35.48 | 25.0 |
| CDX76087 | Canola | nucleus | 33.87 | 23.86 |
| Bra014737.1-P | Field mustard | nucleus | 33.87 | 23.86 |
| KRH30989 | Soybean | plastid | 41.94 | 23.85 |
Protein Annotations
| EnsemblPlants:Os12t0573600-01 | EnsemblPlantsGene:Os12g0573600 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 | PFAM:PF08137 |
| ProteinID:BAT17761.1 | UniParc:UPI0000680D9C | UniProt:A0A0P0YBL3 | MapMan:11.10.1.6.1 | : | : |
Description
Similar to predicted protein. (Os12t0573600-01)
Coordinates
chr12:+:23663142..23663722
Molecular Weight (calculated)
7364.2 Da
IEP (calculated)
11.195
GRAVY (calculated)
-0.723
Length
62 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMCMDDKWK LTKKGSRRLE EGRASRGPSR SVPGRLASLV KEQRARFYIM RRCVTMLVCW RD
1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS
Arabidopsis Description
RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.