CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2
nucleus 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P34070_001	Banana	cytosol	30.0	56.9
KRH30989	Soybean	plastid	54.55	55.05
KRG93907	Soybean	mitochondrion	36.36	54.05
KRH15084	Soybean	plastid	37.27	50.62
KRH73051	Soybean	plastid	37.27	48.81
PGSC0003DMT400016270	Potato	nucleus, plastid	30.91	47.89
Os12t0573600-01	Rice	nucleus	26.36	46.77
GSMUA_Achr10P...	Banana	nucleus	31.82	45.45
TraesCS1B01G292500.1	Wheat	nucleus, plastid	24.55	45.0
Zm00001d030750_P001	Maize	nucleus, plastid	29.09	43.84
TraesCS1A01G283300.1	Wheat	mitochondrion, nucleus	23.64	43.33
KXG33681	Sorghum	cytosol	26.36	43.28
CDY02946	Canola	nucleus, plastid	34.55	43.18
GSMUA_Achr2P16410_001	Banana	nucleus	30.91	43.04
AT3G55515.1	Thale cress	nucleus	30.91	43.04
Os01t0844200-01	Rice	mitochondrion	29.09	42.11
CDX76087	Canola	nucleus	33.64	42.05
Bra014737.1-P	Field mustard	nucleus	33.64	42.05
GSMUA_Achr9P03880_001	Banana	nucleus	32.73	41.86
KXG23779	Sorghum	nucleus	27.27	41.67
GSMUA_Achr7P10600_001	Banana	nucleus	30.91	41.46
KXG23778	Sorghum	plastid	30.91	40.96
GSMUA_Achr9P28300_001	Banana	nucleus	25.45	40.58
CDY41215	Canola	nucleus	30.91	40.0
GSMUA_Achr6P15210_001	Banana	cytosol, plastid	30.0	38.82
Bra007172.1-P	Field mustard	nucleus	30.91	38.64
CDY40235	Canola	nucleus	30.91	38.64
HORVU1Hr1G072580.1	Barley	nucleus, plastid	25.45	38.36
TraesCS3A01G361200.1	Wheat	cytosol, mitochondrion, nucleus	25.45	38.36
TraesCS3B01G393600.1	Wheat	nucleus	24.55	38.03
Zm00001d012414_P001	Maize	cytosol	25.45	37.84
Zm00001d042900_P001	Maize	plastid	25.45	36.84
TraesCS5A01G080800.1	Wheat	plastid	25.45	36.36
TraesCS5D01G091800.1	Wheat	plastid	24.55	35.53
Zm00001d041535_P001	Maize	plastid	20.91	34.33
HORVU5Hr1G020880.1	Barley	plastid	23.64	34.21
TraesCS5B01G085600.1	Wheat	plastid	23.64	34.21
Zm00001d028598_P001	Maize	cytosol	29.09	32.32
Zm00001d047820_P001	Maize	cytosol, mitochondrion, nucleus	28.18	31.31
HORVU4Hr1G059950.1	Barley	cytosol	28.18	30.39
TraesCS4A01G096300.1	Wheat	cytosol	27.27	30.3
TraesCS4D01G209000.1	Wheat	cytosol	27.27	30.3
TraesCS4B01G208100.1	Wheat	cytosol, plastid	27.27	30.3
Os05t0458200-01	Rice	nucleus	23.64	29.89
Os03t0272900-02	Rice	cytosol	26.36	29.59
OQU92832	Sorghum	cytosol, mitochondrion, plastid	28.18	29.25
GSMUA_Achr11P...	Banana	cytosol	29.09	25.6
HORVU3Hr1G086090.1	Barley	cytosol, plastid	23.64	24.3
GSMUA_Achr5P28710_001	Banana	plastid	28.18	22.96

Protein Annotations

EMBL:ACUP02010821	EMBL:BT091802	EnsemblPlants:KRG97895	EnsemblPlantsGene:GLYMA_18G037400	EntrezGene:100526995	InterPro:DVL
PANTHER:PTHR33102	PANTHER:PTHR33102:SF9	PFAM:PF08137	ProteinID:KRG97895	ProteinID:KRG97895.1	SEG:seg
UniParc:UPI0001B1527A	UniProt:C6T2Z3	MapMan:11.10.1.6.1	:	:	:

Description

hypothetical protein

Coordinates

chr18:-:2929733..2930890

Molecular Weight (calculated)

12223.5 Da

IEP (calculated)

10.165

GRAVY (calculated)

-0.576

Length

110 amino acids

Sequence
(BLAST)

001: MASSNCAIST CTSGTTAGIN NNTDQSTVPP IMYLSNSEKW NKLSKKEGRS STTSSSSLMK NSSSSSSSST QRKCAFARKC ARLVKEQRAR FYIMRRCVIM
101: LICWHEYNDS

Best Arabidopsis Sequence Match ( AT2G39705.1 )
(BLAST)

1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS

Arabidopsis Description

RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.