Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G292500.1 | Wheat | nucleus, plastid | 35.63 | 51.67 |
| TraesCS1A01G283300.1 | Wheat | mitochondrion, nucleus | 35.63 | 51.67 |
| Os12t0573600-01 | Rice | nucleus | 36.78 | 51.61 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 32.18 | 48.28 |
| GSMUA_Achr10P... | Banana | nucleus | 42.53 | 48.05 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 36.78 | 46.38 |
| HORVU1Hr1G072580.1 | Barley | nucleus, plastid | 36.78 | 43.84 |
| Os01t0844200-01 | Rice | mitochondrion | 34.48 | 39.47 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 35.63 | 39.24 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 29.89 | 36.62 |
| Bra017058.1-P | Field mustard | plastid | 35.63 | 34.44 |
| CDY07025 | Canola | plastid | 32.18 | 34.15 |
| Os03t0272900-02 | Rice | cytosol | 37.93 | 33.67 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 31.03 | 32.53 |
| CDX93246 | Canola | plastid | 29.89 | 31.71 |
| AT2G39705.1 | Thale cress | plastid | 31.03 | 31.03 |
| KRH73051 | Soybean | plastid | 29.89 | 30.95 |
| KRH15084 | Soybean | plastid | 28.74 | 30.86 |
| AT3G55515.1 | Thale cress | nucleus | 27.59 | 30.38 |
| KRG93907 | Soybean | mitochondrion | 25.29 | 29.73 |
| CDY69313 | Canola | plastid | 32.18 | 29.17 |
| CDY20471 | Canola | plastid | 32.18 | 29.17 |
| CDX74841 | Canola | plastid | 32.18 | 29.17 |
| CDY41215 | Canola | nucleus | 27.59 | 28.24 |
| Bra005022.1-P | Field mustard | plastid | 31.03 | 28.12 |
| Bra007172.1-P | Field mustard | nucleus | 27.59 | 27.27 |
| CDY40235 | Canola | nucleus | 27.59 | 27.27 |
| CDY02946 | Canola | nucleus, plastid | 26.44 | 26.14 |
| CDX76087 | Canola | nucleus | 25.29 | 25.0 |
| Bra014737.1-P | Field mustard | nucleus | 25.29 | 25.0 |
| KRG97895 | Soybean | cytosol, plastid | 29.89 | 23.64 |
| KRH30989 | Soybean | plastid | 28.74 | 22.94 |
Protein Annotations
| EMBL:AK241283 | EnsemblPlants:Os05t0458200-01 | EnsemblPlantsGene:Os05g0458200 | EntrezGene:107278465 | InterPro:DVL | PANTHER:PTHR33102 |
| PANTHER:PTHR33102:SF3 | PFAM:PF08137 | ProteinID:BAS94384.1 | RefSeq:XP_015639049.1 | SEG:seg | UniParc:UPI000188AF63 |
| UniProt:B7F8P9 | MapMan:11.10.1.6.1 | : | : | : | : |
Description
Hypothetical conserved gene. (Os05t0458200-01)
Coordinates
chr5:-:22496383..22496982
Molecular Weight (calculated)
9791.8 Da
IEP (calculated)
10.545
GRAVY (calculated)
-0.799
Length
87 amino acids
Sequence
(BLAST)
(BLAST)
1: MEAMESRAED QGVKRREPCK KRIGRTAGAG SEAGNGSRHQ ASCSPPPPPS SSFPRRCARL VKEQRARLYI VRRCITMLAC WRDVDYL
1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS
Arabidopsis Description
RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.