Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX76087 | Canola | nucleus | 100.0 | 100.0 |
| CDY02946 | Canola | nucleus, plastid | 96.59 | 96.59 |
| Bra007172.1-P | Field mustard | nucleus | 52.27 | 52.27 |
| AT3G55515.1 | Thale cress | nucleus | 43.18 | 48.1 |
| Bra017058.1-P | Field mustard | plastid | 45.45 | 44.44 |
| TraesCS1B01G292500.1 | Wheat | nucleus, plastid | 29.55 | 43.33 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 28.41 | 43.1 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 34.09 | 42.25 |
| Bra005022.1-P | Field mustard | plastid | 44.32 | 40.62 |
| TraesCS1A01G283300.1 | Wheat | mitochondrion, nucleus | 27.27 | 40.0 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 37.5 | 39.76 |
| KRG93907 | Soybean | mitochondrion | 32.95 | 39.19 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 28.41 | 36.23 |
| TraesCS3A01G361200.1 | Wheat | cytosol, mitochondrion, nucleus | 29.55 | 35.62 |
| HORVU1Hr1G072580.1 | Barley | nucleus, plastid | 29.55 | 35.62 |
| TraesCS3B01G393600.1 | Wheat | nucleus | 28.41 | 35.21 |
| Zm00001d041535_P001 | Maize | plastid | 26.14 | 34.33 |
| KXG33681 | Sorghum | cytosol | 26.14 | 34.33 |
| Os12t0573600-01 | Rice | nucleus | 23.86 | 33.87 |
| KRG97895 | Soybean | cytosol, plastid | 42.05 | 33.64 |
| Zm00001d042900_P001 | Maize | plastid | 28.41 | 32.89 |
| GSMUA_Achr10P... | Banana | nucleus | 28.41 | 32.47 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 28.41 | 31.65 |
| KXG23778 | Sorghum | plastid | 29.55 | 31.33 |
| KRH30989 | Soybean | plastid | 38.64 | 31.19 |
| Zm00001d012414_P001 | Maize | cytosol | 26.14 | 31.08 |
| GSMUA_Achr7P10600_001 | Banana | nucleus | 28.41 | 30.49 |
| Os01t0844200-01 | Rice | mitochondrion | 26.14 | 30.26 |
| GSMUA_Achr9P03880_001 | Banana | nucleus | 29.55 | 30.23 |
| Zm00001d030750_P001 | Maize | nucleus, plastid | 25.0 | 30.14 |
| GSMUA_Achr6P15210_001 | Banana | cytosol, plastid | 28.41 | 29.41 |
| KXG23779 | Sorghum | nucleus | 23.86 | 29.17 |
| TraesCS5A01G080800.1 | Wheat | plastid | 25.0 | 28.57 |
| TraesCS5B01G085600.1 | Wheat | plastid | 23.86 | 27.63 |
| TraesCS5D01G091800.1 | Wheat | plastid | 23.86 | 27.63 |
| HORVU5Hr1G020880.1 | Barley | plastid | 22.73 | 26.32 |
| TraesCS4A01G096300.1 | Wheat | cytosol | 29.55 | 26.26 |
| Os03t0272900-02 | Rice | cytosol | 28.41 | 25.51 |
| HORVU4Hr1G059950.1 | Barley | cytosol | 29.55 | 25.49 |
| Os05t0458200-01 | Rice | nucleus | 25.0 | 25.29 |
| TraesCS4B01G208100.1 | Wheat | cytosol, plastid | 28.41 | 25.25 |
| TraesCS4D01G209000.1 | Wheat | cytosol | 28.41 | 25.25 |
| Zm00001d047820_P001 | Maize | cytosol, mitochondrion, nucleus | 27.27 | 24.24 |
| Zm00001d028598_P001 | Maize | cytosol | 27.27 | 24.24 |
| OQU92832 | Sorghum | cytosol, mitochondrion, plastid | 28.41 | 23.58 |
| HORVU3Hr1G086090.1 | Barley | cytosol, plastid | 27.27 | 22.43 |
| GSMUA_Achr11P... | Banana | cytosol | 25.0 | 17.6 |
| GSMUA_Achr5P28710_001 | Banana | plastid | 26.14 | 17.04 |
Protein Annotations
Description
AT3G55515 (E=1e-022) DVL8, RTFL7 | RTFL7 (ROTUNDIFOLIA LIKE 7)
Coordinates
chrA04:-:2685597..2685863
Molecular Weight (calculated)
10240.1 Da
IEP (calculated)
10.928
GRAVY (calculated)
-1.051
Length
88 amino acids
Sequence
(BLAST)
(BLAST)
1: MTRSSANAPQ FQRWNLSSKK ETFGDDGDTS RVTSSLRQKK QGKHGFTRKC GRLVREQGAR FYIIRRCVIM LLCWTDNSNH NKNYSDHS
1: MSRLRNSAQL QLSKKESLGD NGGALNTTRS SRQKQGKYGF TRKCGRLVKE QRARFYIMRR CVVMLICWTD HNNNNSDHS
Arabidopsis Description
DVL8DVL8 [Source:UniProtKB/TrEMBL;Acc:Q6IM93]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.