Factsheet for PGSC0003DMT400016270

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH15084	Soybean	plastid	63.38	55.56
KRH73051	Soybean	plastid	63.38	53.57
GSMUA_Achr6P34070_001	Banana	cytosol	42.25	51.72
VIT_13s0019g01890.t01	Wine grape	plastid	59.15	50.6
TraesCS1B01G292500.1	Wheat	nucleus, plastid	40.85	48.33
Os12t0573600-01	Rice	nucleus	40.85	46.77
KXG33681	Sorghum	cytosol	40.85	43.28
GSMUA_Achr9P28300_001	Banana	nucleus	40.85	42.03
GSMUA_Achr9P03880_001	Banana	nucleus	50.7	41.86
GSMUA_Achr10P...	Banana	nucleus	45.07	41.56
TraesCS3A01G361200.1	Wheat	cytosol, mitochondrion, nucleus	42.25	41.1
TraesCS3B01G393600.1	Wheat	nucleus	40.85	40.85
Os01t0844200-01	Rice	mitochondrion	43.66	40.79
KRG93907	Soybean	mitochondrion	42.25	40.54
GSMUA_Achr7P10600_001	Banana	nucleus	46.48	40.24
GSMUA_Achr6P15210_001	Banana	cytosol, plastid	47.89	40.0
TraesCS1A01G283300.1	Wheat	mitochondrion, nucleus	33.8	40.0
HORVU1Hr1G072580.1	Barley	nucleus, plastid	40.85	39.73
GSMUA_Achr2P16410_001	Banana	nucleus	43.66	39.24
Zm00001d030750_P001	Maize	nucleus, plastid	39.44	38.36
Zm00001d042900_P001	Maize	plastid	40.85	38.16
AT3G55515.1	Thale cress	nucleus	42.25	37.97
Zm00001d012414_P001	Maize	cytosol	39.44	37.84
KXG23779	Sorghum	nucleus	38.03	37.5
TraesCS5A01G080800.1	Wheat	plastid	39.44	36.36
KXG23778	Sorghum	plastid	42.25	36.14
Zm00001d041535_P001	Maize	plastid	33.8	35.82
TraesCS5D01G091800.1	Wheat	plastid	38.03	35.53
KRH30989	Soybean	plastid	53.52	34.86
TraesCS5B01G085600.1	Wheat	plastid	36.62	34.21
HORVU5Hr1G020880.1	Barley	plastid	36.62	34.21
CDX76087	Canola	nucleus	42.25	34.09
Bra014737.1-P	Field mustard	nucleus	42.25	34.09
CDY02946	Canola	nucleus, plastid	40.85	32.95
Os03t0272900-02	Rice	cytosol	45.07	32.65
TraesCS4A01G096300.1	Wheat	cytosol	43.66	31.31
TraesCS4B01G208100.1	Wheat	cytosol, plastid	43.66	31.31
TraesCS4D01G209000.1	Wheat	cytosol	43.66	31.31
KRG97895	Soybean	cytosol, plastid	47.89	30.91
HORVU4Hr1G059950.1	Barley	cytosol	43.66	30.39
Zm00001d028598_P001	Maize	cytosol	42.25	30.3
Zm00001d047820_P001	Maize	cytosol, mitochondrion, nucleus	42.25	30.3
Os05t0458200-01	Rice	nucleus	36.62	29.89
OQU92832	Sorghum	cytosol, mitochondrion, plastid	42.25	28.3
HORVU3Hr1G086090.1	Barley	cytosol, plastid	42.25	28.04
CDY41215	Canola	nucleus	32.39	27.06
CDY40235	Canola	nucleus	32.39	26.14
Bra007172.1-P	Field mustard	nucleus	32.39	26.14
GSMUA_Achr11P...	Banana	cytosol	45.07	25.6
GSMUA_Achr5P28710_001	Banana	plastid	43.66	22.96

Protein Annotations

EnsemblPlants:PGSC0003DMT400016270	EnsemblPlantsGene:PGSC0003DMG400006357	InterPro:DVL	PANTHER:PTHR33102	PANTHER:PTHR33102:SF9	PFAM:PF08137
PGSC:PGSC0003DMG400006357	SEG:seg	UniParc:UPI00029638C6	UniProt:M1A7E0	MapMan:11.10.1.6.1	:

Description

DVL11 [Source:PGSC_GENE;Acc:PGSC0003DMG400006357]

Coordinates

chr4:-:7420191..7420863

Molecular Weight (calculated)

8381.1 Da

IEP (calculated)

10.480

GRAVY (calculated)

-0.752

Length

71 amino acids

Sequence
(BLAST)

1: MALDNSIDKC NLSKKQTSNS SSNFLKNSSS HHKRCAFTRK CANLVKEQRA KFYIMRRCVT MLICWRDYRD T

Best Arabidopsis Sequence Match ( AT2G39705.1 )
(BLAST)

1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS

Arabidopsis Description

RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.