Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G085600.1 | Wheat | plastid | 96.05 | 96.05 |
| HORVU5Hr1G020880.1 | Barley | plastid | 96.05 | 96.05 |
| TraesCS5A01G080800.1 | Wheat | plastid | 96.05 | 94.81 |
| Os12t0573600-01 | Rice | nucleus | 63.16 | 77.42 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 46.05 | 60.34 |
| Zm00001d041535_P001 | Maize | plastid | 51.32 | 58.21 |
| KXG23778 | Sorghum | plastid | 61.84 | 56.63 |
| GSMUA_Achr10P... | Banana | nucleus | 55.26 | 54.55 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 48.68 | 53.62 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 48.68 | 46.84 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 35.53 | 38.03 |
| Bra005022.1-P | Field mustard | plastid | 44.74 | 35.42 |
| KRH15084 | Soybean | plastid | 36.84 | 34.57 |
| AT2G39705.1 | Thale cress | plastid | 39.47 | 34.48 |
| CDY20471 | Canola | plastid | 43.42 | 34.38 |
| CDY69313 | Canola | plastid | 43.42 | 34.38 |
| CDX74841 | Canola | plastid | 43.42 | 34.38 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 36.84 | 33.73 |
| TraesCS4D01G209000.1 | Wheat | cytosol | 43.42 | 33.33 |
| KRH73051 | Soybean | plastid | 36.84 | 33.33 |
| CDY07025 | Canola | plastid | 35.53 | 32.93 |
| CDX93246 | Canola | plastid | 35.53 | 32.93 |
| AT3G55515.1 | Thale cress | nucleus | 31.58 | 30.38 |
| Bra017058.1-P | Field mustard | plastid | 34.21 | 28.89 |
| KRG93907 | Soybean | mitochondrion | 27.63 | 28.38 |
| CDY02946 | Canola | nucleus, plastid | 28.95 | 25.0 |
| KRG97895 | Soybean | cytosol, plastid | 35.53 | 24.55 |
| Bra014737.1-P | Field mustard | nucleus | 27.63 | 23.86 |
| CDX76087 | Canola | nucleus | 27.63 | 23.86 |
| CDY41215 | Canola | nucleus | 25.0 | 22.35 |
| KRH30989 | Soybean | plastid | 31.58 | 22.02 |
| Bra007172.1-P | Field mustard | nucleus | 25.0 | 21.59 |
| CDY40235 | Canola | nucleus | 25.0 | 21.59 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G091800.1 | EnsemblPlantsGene:TraesCS5D01G091800 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF9 | PFAM:PF08137 |
| SEG:seg | MapMan:11.10.1.6.1 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:99418527..99418757
Molecular Weight (calculated)
8345.3 Da
IEP (calculated)
11.949
GRAVY (calculated)
-0.391
Length
76 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMCMDDKWK LSKKGSRRSA AVAPAAATGS PVGVKGRASR GSGRSVPGRL ASLAKQQRAR FYIMRRCVTM LVCWRD
001: MEEKWKLSKK DTTASSSSSK SKFSRSFSTS ASSTKSPIFV RSSSTKCSVP SSSSSSSSSS SISRSFSRKE RRSSSSSSSS ITQKYSSLAK EQKARFYIMR
101: RCVAMLVCWH KHGDS
101: RCVAMLVCWH KHGDS
Arabidopsis Description
RTFL2RTFL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.