Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0573600-01 | Rice | nucleus | 54.22 | 72.58 |
| TraesCS5A01G080800.1 | Wheat | plastid | 60.24 | 64.94 |
| TraesCS5D01G091800.1 | Wheat | plastid | 56.63 | 61.84 |
| TraesCS5B01G085600.1 | Wheat | plastid | 55.42 | 60.53 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 42.17 | 60.34 |
| HORVU5Hr1G020880.1 | Barley | plastid | 54.22 | 59.21 |
| KXG23779 | Sorghum | nucleus | 49.4 | 56.94 |
| Zm00001d041535_P001 | Maize | plastid | 42.17 | 52.24 |
| KXG33681 | Sorghum | cytosol | 42.17 | 52.24 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 42.17 | 50.72 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 46.99 | 49.37 |
| GSMUA_Achr10P... | Banana | nucleus | 45.78 | 49.35 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 44.58 | 44.58 |
| KRH15084 | Soybean | plastid | 42.17 | 43.21 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 36.14 | 42.25 |
| KRH73051 | Soybean | plastid | 42.17 | 41.67 |
| Bra005022.1-P | Field mustard | plastid | 46.99 | 40.62 |
| CDY20471 | Canola | plastid | 45.78 | 39.58 |
| CDY69313 | Canola | plastid | 45.78 | 39.58 |
| CDX74841 | Canola | plastid | 45.78 | 39.58 |
| AT2G39705.1 | Thale cress | plastid | 40.96 | 39.08 |
| CDX93246 | Canola | plastid | 38.55 | 39.02 |
| CDY07025 | Canola | plastid | 38.55 | 39.02 |
| OQU92832 | Sorghum | cytosol, mitochondrion, plastid | 49.4 | 38.68 |
| Bra017058.1-P | Field mustard | plastid | 37.35 | 34.44 |
| KRG93907 | Soybean | mitochondrion | 28.92 | 32.43 |
| AT3G55515.1 | Thale cress | nucleus | 30.12 | 31.65 |
| KRG97895 | Soybean | cytosol, plastid | 40.96 | 30.91 |
| CDY02946 | Canola | nucleus, plastid | 32.53 | 30.68 |
| CDX76087 | Canola | nucleus | 31.33 | 29.55 |
| Bra014737.1-P | Field mustard | nucleus | 31.33 | 29.55 |
| CDY41215 | Canola | nucleus | 28.92 | 28.24 |
| KRH30989 | Soybean | plastid | 36.14 | 27.52 |
| Bra007172.1-P | Field mustard | nucleus | 28.92 | 27.27 |
| CDY40235 | Canola | nucleus | 28.92 | 27.27 |
Protein Annotations
| EnsemblPlants:KXG23778 | EnsemblPlantsGene:SORBI_3008G139300 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 | PFAM:PF08137 |
| ProteinID:KXG23778 | ProteinID:KXG23778.1 | SEG:seg | UniParc:UPI00081ACACC | UniProt:A0A1B6PDM2 | MapMan:11.10.1.6.1 |
Description
hypothetical protein
Coordinates
chr8:+:56906312..56906563
Molecular Weight (calculated)
9152.2 Da
IEP (calculated)
11.909
GRAVY (calculated)
-0.461
Length
83 amino acids
Sequence
(BLAST)
(BLAST)
1: MEMCLDEKWK LSSSSKKGSR RSAAVAPAAT SPRGLNKGRT TSSRGPAARS AAVHGRLASL VKEQRARFYI VRRCVTMLVC WRD
1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS
Arabidopsis Description
RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.