Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d028598_P001 | Maize | cytosol | 82.08 | 87.88 |
| Zm00001d047820_P001 | Maize | cytosol, mitochondrion, nucleus | 78.3 | 83.84 |
| TraesCS4D01G209000.1 | Wheat | cytosol | 68.87 | 73.74 |
| TraesCS4B01G208100.1 | Wheat | cytosol, plastid | 68.87 | 73.74 |
| HORVU4Hr1G059950.1 | Barley | cytosol | 70.75 | 73.53 |
| TraesCS4A01G096300.1 | Wheat | cytosol | 67.92 | 72.73 |
| Os03t0272900-02 | Rice | cytosol | 66.98 | 72.45 |
| GSMUA_Achr6P34070_001 | Banana | cytosol | 33.96 | 62.07 |
| KXG33681 | Sorghum | cytosol | 35.85 | 56.72 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 33.96 | 52.17 |
| GSMUA_Achr10P... | Banana | nucleus | 36.79 | 50.65 |
| KXG23778 | Sorghum | plastid | 38.68 | 49.4 |
| KXG23779 | Sorghum | nucleus | 31.13 | 45.83 |
| KRH15084 | Soybean | plastid | 34.91 | 45.68 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 34.91 | 44.58 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 33.02 | 44.3 |
| KRH73051 | Soybean | plastid | 34.91 | 44.05 |
| CDX93246 | Canola | plastid | 33.96 | 43.9 |
| CDY07025 | Canola | plastid | 33.02 | 42.68 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 28.3 | 42.25 |
| Bra017058.1-P | Field mustard | plastid | 32.08 | 37.78 |
| AT2G39705.1 | Thale cress | plastid | 30.19 | 36.78 |
| AT3G55515.1 | Thale cress | nucleus | 27.36 | 36.71 |
| KRG93907 | Soybean | mitochondrion | 25.47 | 36.49 |
| CDY41215 | Canola | nucleus | 28.3 | 35.29 |
| Bra007172.1-P | Field mustard | nucleus | 28.3 | 34.09 |
| CDY40235 | Canola | nucleus | 28.3 | 34.09 |
| Bra005022.1-P | Field mustard | plastid | 29.25 | 32.29 |
| CDY20471 | Canola | plastid | 29.25 | 32.29 |
| CDX74841 | Canola | plastid | 29.25 | 32.29 |
| CDY69313 | Canola | plastid | 29.25 | 32.29 |
| CDY02946 | Canola | nucleus, plastid | 24.53 | 29.55 |
| KRH30989 | Soybean | plastid | 29.25 | 28.44 |
| CDX76087 | Canola | nucleus | 23.58 | 28.41 |
| Bra014737.1-P | Field mustard | nucleus | 23.58 | 28.41 |
| KRG97895 | Soybean | cytosol, plastid | 29.25 | 28.18 |
Protein Annotations
| EnsemblPlants:OQU92832 | EnsemblPlantsGene:SORBI_3001G422366 | EntrezGene:8084940 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF3 |
| PFAM:PF08137 | ProteinID:OQU92832 | ProteinID:OQU92832.1 | RefSeq:XP_002465487.1 | SEG:seg | UniParc:UPI0001A82CE9 |
| UniProt:A0A1Z5SA84 | MapMan:11.10.1.6.1 | : | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:70325128..70326124
Molecular Weight (calculated)
11194.5 Da
IEP (calculated)
10.920
GRAVY (calculated)
-0.349
Length
106 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFYVDEKWK FSKKSRNNGS RRVPGAGGAG GGDSLLKRSS SMRDVPAIGR RGSGAAGAAA AAAAAGGCAP QPSFSSRCAG LVKEQRARFY IMRRCVTMLV
101: CWKDCS
101: CWKDCS
1: MASSSSLTRS GSVHLDEKWK LSKKDGGASR ITRSSSTSSS SFNGKKQGRC AFTRKCARLV KEQRARFYIM RRCVIMLICW RDNYSDS
Arabidopsis Description
RTFL8RTFL8 [Source:UniProtKB/TrEMBL;Acc:A0A178VQG8]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.