Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P34070_001 | Banana | cytosol | 49.41 | 72.41 |
| GSMUA_Achr7P10600_001 | Banana | nucleus | 68.24 | 70.73 |
| GSMUA_Achr9P03880_001 | Banana | nucleus | 69.41 | 68.6 |
| GSMUA_Achr10P... | Banana | nucleus | 57.65 | 63.64 |
| GSMUA_Achr9P28300_001 | Banana | nucleus | 47.06 | 57.97 |
| GSMUA_Achr2P16410_001 | Banana | nucleus | 47.06 | 50.63 |
| KRH15084 | Soybean | plastid | 45.88 | 48.15 |
| PGSC0003DMT400016270 | Potato | nucleus, plastid | 40.0 | 47.89 |
| KRH73051 | Soybean | plastid | 45.88 | 46.43 |
| CDX93246 | Canola | plastid | 44.71 | 46.34 |
| CDY07025 | Canola | plastid | 44.71 | 46.34 |
| VIT_13s0019g01890.t01 | Wine grape | plastid | 41.18 | 42.17 |
| AT3G55515.1 | Thale cress | nucleus | 36.47 | 39.24 |
| AT2G39705.1 | Thale cress | plastid | 40.0 | 39.08 |
| Bra017058.1-P | Field mustard | plastid | 41.18 | 38.89 |
| Bra005022.1-P | Field mustard | plastid | 43.53 | 38.54 |
| CDY20471 | Canola | plastid | 42.35 | 37.5 |
| CDX74841 | Canola | plastid | 42.35 | 37.5 |
| CDY69313 | Canola | plastid | 42.35 | 37.5 |
| GSMUA_Achr11P... | Banana | cytosol | 51.76 | 35.2 |
| KRG93907 | Soybean | mitochondrion | 29.41 | 33.78 |
| CDY41215 | Canola | nucleus | 32.94 | 32.94 |
| KRH30989 | Soybean | plastid | 41.18 | 32.11 |
| CDY40235 | Canola | nucleus | 32.94 | 31.82 |
| Bra007172.1-P | Field mustard | nucleus | 32.94 | 31.82 |
| GSMUA_Achr5P28710_001 | Banana | plastid | 49.41 | 31.11 |
| KRG97895 | Soybean | cytosol, plastid | 38.82 | 30.0 |
| CDY02946 | Canola | nucleus, plastid | 30.59 | 29.55 |
| CDX76087 | Canola | nucleus | 29.41 | 28.41 |
| Bra014737.1-P | Field mustard | nucleus | 29.41 | 28.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P15210_001 | EnsemblPlants:GSMUA_Achr6T15210_001 | EnsemblPlantsGene:GSMUA_Achr6G15210_001 | InterPro:DVL | PANTHER:PTHR33102 | PANTHER:PTHR33102:SF9 |
| PFAM:PF08137 | UniParc:UPI000294BD40 | UniProt:M0T769 | MapMan:11.10.1.6.1 | : | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G15210_001]
Coordinates
chr6:-:10126256..10126713
Molecular Weight (calculated)
9832.1 Da
IEP (calculated)
11.497
GRAVY (calculated)
-0.471
Length
85 amino acids
Sequence
(BLAST)
(BLAST)
1: MELFMEEKWK LSKKGSRSCN ASRRIMGVEG AGPFLKGSAS TRQMRRTAAP GSFSSRFASL VKEQRARFYI MRRCVTMLIC WRDYP
001: MEEKWKLSKK DTTASSSSSK SKFSRSFSTS ASSTKSPIFV RSSSTKCSVP SSSSSSSSSS SISRSFSRKE RRSSSSSSSS ITQKYSSLAK EQKARFYIMR
101: RCVAMLVCWH KHGDS
101: RCVAMLVCWH KHGDS
Arabidopsis Description
RTFL2RTFL2 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ1]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.