Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra014370.1-P | Field mustard | nucleus | 98.78 | 96.72 |
| CDY26148 | Canola | nucleus, plastid | 93.9 | 86.27 |
| CDY51405 | Canola | nucleus | 32.01 | 82.68 |
| CDY61477 | Canola | nucleus, plastid | 73.78 | 80.4 |
| CDY02487 | Canola | nucleus, plastid | 72.87 | 77.6 |
| AT1G54060.1 | Thale cress | nucleus | 79.27 | 67.89 |
| CDY33093 | Canola | cytosol, plastid | 71.95 | 54.0 |
| CDY33246 | Canola | nucleus | 41.77 | 44.77 |
| CDY39099 | Canola | nucleus | 41.77 | 43.22 |
| CDY39101 | Canola | nucleus, plastid | 39.02 | 41.97 |
| CDX75751 | Canola | nucleus | 47.26 | 41.67 |
| Solyc03g122030.1.1 | Tomato | nucleus | 42.38 | 38.29 |
| KRH06239 | Soybean | nucleus | 42.68 | 37.84 |
| KRH47662 | Soybean | nucleus, plastid | 42.07 | 37.5 |
| VIT_09s0002g00720.t01 | Wine grape | nucleus | 41.46 | 37.36 |
| PGSC0003DMT400088401 | Potato | nucleus, plastid | 42.38 | 37.27 |
| CDY36316 | Canola | nucleus | 27.44 | 35.71 |
| CDY00995 | Canola | nucleus | 27.44 | 35.16 |
| CDX70144 | Canola | cytosol | 25.61 | 33.6 |
| CDX71939 | Canola | nucleus, plastid | 27.74 | 30.23 |
| GSMUA_Achr8P23650_001 | Banana | nucleus | 31.1 | 29.91 |
| GSMUA_Achr9P14340_001 | Banana | nucleus | 32.32 | 29.28 |
| CDX67755 | Canola | nucleus | 27.74 | 28.8 |
| CDX98311 | Canola | nucleus | 27.13 | 28.53 |
| CDX98849 | Canola | cytosol | 26.22 | 28.01 |
| TraesCS6A01G198600.1 | Wheat | nucleus, plastid | 31.1 | 27.57 |
| Zm00001d003549_P001 | Maize | nucleus | 30.49 | 25.97 |
| Os04t0445600-00 | Rice | nucleus | 32.93 | 25.9 |
| HORVU6Hr1G050140.1 | Barley | nucleus, plastid | 32.93 | 25.84 |
| GSMUA_Achr3P05880_001 | Banana | nucleus | 31.4 | 25.5 |
| TraesCS6B01G230000.1 | Wheat | nucleus | 32.32 | 25.48 |
| Os02t0565000-01 | Rice | nucleus | 32.32 | 25.3 |
| Zm00001d025514_P001 | Maize | nucleus | 30.18 | 25.26 |
| CDX93016 | Canola | nucleus | 15.24 | 25.25 |
| EES12241 | Sorghum | nucleus | 31.4 | 25.25 |
| Zm00001d016876_P001 | Maize | nucleus, plastid | 30.79 | 25.12 |
| TraesCS6D01G184500.2 | Wheat | nucleus | 31.4 | 24.76 |
| TraesCS2D01G311800.1 | Wheat | nucleus, plastid | 30.49 | 24.21 |
| TraesCS2A01G313300.1 | Wheat | nucleus, plastid | 30.49 | 24.04 |
| TraesCS2B01G332100.1 | Wheat | nucleus, plastid | 30.18 | 23.8 |
| KXG30464 | Sorghum | nucleus, plastid | 30.18 | 23.46 |
| Zm00001d010753_P001 | Maize | nucleus | 21.95 | 21.95 |
| CDX94808 | Canola | nucleus | 20.12 | 20.56 |
| HORVU2Hr1G077940.1 | Barley | cytosol, nucleus, plastid | 10.37 | 15.18 |
| Zm00001d042917_P001 | Maize | golgi, plasma membrane | 24.09 | 11.9 |
Protein Annotations
| EnsemblPlants:CDY08216 | EnsemblPlantsGene:GSBRNA2T00125531001 | ncoils:Coil | PANTHER:PTHR31307 | PFAM:PF13837 | ProteinID:CDY08216 |
| ProteinID:CDY08216.1 | SEG:seg | UniParc:UPI0004EDD6EE | UniProt:A0A078F4B5 | MapMan:15.5.20 | : |
Description
BnaA05g14030DBnaA05g14030D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4B5]
Coordinates
chrLK031984:+:147533..148816
Molecular Weight (calculated)
36132.6 Da
IEP (calculated)
8.047
GRAVY (calculated)
-0.952
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MDEEDETRSP KSPGDSLSPA PSSPPPILPT SDVTVASATK PPQSLALVVH TPSVVGGSRN GRSGGGGGRD DCWSEEATKV LIEAWGERFS EPGKGTLKQQ
101: QWKEVAEVVN ESRQCKYLKT DVQCKNRIDT VKKKYKQEKA KIASGDGPSK WVFFKKLESL IGAAGGNSTK APMGRRQGNK GTVLKRGSDS MRWHFRKRSA
201: SETESESDPE PEPEHSPPDS AESLPPPPPP SQLVSKRLKM DELGGSGVGD VAKAILGFTE AYEKAETAKL KLMMELEKER MKFVKEMELQ RMQFLKTQME
301: MTQNDREEER SKPRINDDDV KNNGDVSS
101: QWKEVAEVVN ESRQCKYLKT DVQCKNRIDT VKKKYKQEKA KIASGDGPSK WVFFKKLESL IGAAGGNSTK APMGRRQGNK GTVLKRGSDS MRWHFRKRSA
201: SETESESDPE PEPEHSPPDS AESLPPPPPP SQLVSKRLKM DELGGSGVGD VAKAILGFTE AYEKAETAKL KLMMELEKER MKFVKEMELQ RMQFLKTQME
301: MTQNDREEER SKPRINDDDV KNNGDVSS
001: MEDDDEIQSI PSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPQPGLSSQS PSMNALALVV HTPSVTGGGG SGNRNGRGGG GGSGGGGGGR DDCWSEEATK
101: VLIEAWGDRF SEPGKGTLKQ QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES LIGGTTTFIA SSKASEKAPM
201: GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA
301: ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ RGERRIVDDD DDRNGKNNGN VSS
101: VLIEAWGDRF SEPGKGTLKQ QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES LIGGTTTFIA SSKASEKAPM
201: GGALGNSRSS MFKRQTKGNQ IVQQQQEKRG SDSMRWHFRK RSASETESES DPEPEASPEE SAESLPPLQP IQPLSFHMPK RLKVDKSGGG GSGVGDVARA
301: ILGFTEAYEK AETAKLKLMA ELEKERMKFA KEMELQRMQF LKTQLEITQN NQEEEERSRQ RGERRIVDDD DDRNGKNNGN VSS
Arabidopsis Description
ASIL1Trihelix transcription factor ASIL1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYG2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.