Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra018237.1-P | Field mustard | cytosol | 98.59 | 98.59 |
| CDX84783 | Canola | cytosol | 95.77 | 95.77 |
| CDY10807 | Canola | cytosol | 95.77 | 95.77 |
| CDY15390 | Canola | cytosol | 95.77 | 95.77 |
| CDY19085 | Canola | cytosol | 95.77 | 95.77 |
| CDY23940 | Canola | cytosol | 95.77 | 95.77 |
| CDY34488 | Canola | cytosol | 95.77 | 95.77 |
| AT2G31490.1 | Thale cress | cytosol | 95.77 | 95.77 |
| GSMUA_Achr3P15720_001 | Banana | cytosol | 81.69 | 81.69 |
| VIT_12s0055g00700.t01 | Wine grape | cytosol | 81.69 | 81.69 |
| EES01418 | Sorghum | cytosol | 74.65 | 74.65 |
| Os01t0750800-02 | Rice | cytosol | 73.24 | 73.24 |
| TraesCS3A01G290400.1 | Wheat | cytosol | 71.83 | 71.83 |
| TraesCS3B01G325200.1 | Wheat | cytosol | 71.83 | 71.83 |
| TraesCS3D01G290200.1 | Wheat | cytosol | 71.83 | 71.83 |
| EES03615 | Sorghum | cytosol | 71.83 | 71.83 |
| Solyc05g046390.2.1 | Tomato | plastid | 63.38 | 70.31 |
| Zm00001d012741_P001 | Maize | cytosol | 71.83 | 68.0 |
| KRH49068 | Soybean | cytosol | 66.2 | 62.67 |
| Os01t0732100-00 | Rice | mitochondrion | 71.83 | 60.0 |
| Solyc09g059220.1.1 | Tomato | cytosol | 54.93 | 52.7 |
| HORVU3Hr1G071870.1 | Barley | cytosol, golgi, plasma membrane | 71.83 | 50.49 |
| Zm00001d012742_P001 | Maize | cytosol | 57.75 | 29.93 |
| Zm00001d012469_P001 | Maize | cytosol | 56.34 | 29.2 |
| OQU91338 | Sorghum | plastid | 43.66 | 25.2 |
Protein Annotations
| EnsemblPlants:CDY10808 | EnsemblPlantsGene:GSBRNA2T00048661001 | GO:A0A078FFE1 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35479 | ProteinID:CDY10808 | ProteinID:CDY10808.1 | TMHMM:TMhelix | UniParc:UPI0004EDE144 | UniProt:A0A078FFE1 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaA05g11280DBnaA05g11280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FFE1]
Coordinates
chrLK032006:+:855836..856780
Molecular Weight (calculated)
8265.9 Da
IEP (calculated)
9.947
GRAVY (calculated)
-0.587
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: MGGGMETNKN KFIEDWGSAR ENLEHNFRWT RRNFALTGIF GIALPILVYK GVVKDFHMQD EDAGRPHRKF L
1: MGGGMETNKN KFIEDWGSAR ENLEHNFRWT RRNFALIGIF GIALPIIVYK GIVKDFHMQD EDAGRPHRKF L
Arabidopsis Description
AT2G31490 protein [Source:UniProtKB/TrEMBL;Acc:Q9SIQ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.