Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- nucleus 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra027174.1-P | Field mustard | plastid | 49.48 | 98.8 |
| AT3G16310.1 | Thale cress | plastid | 43.93 | 89.06 |
| CDY30157 | Canola | plastid | 52.62 | 82.78 |
| VIT_09s0002g03770.t01 | Wine grape | mitochondrion, plastid | 34.03 | 71.61 |
| KRH09922 | Soybean | endoplasmic reticulum, nucleus | 33.73 | 67.98 |
| KRH23409 | Soybean | mitochondrion | 33.58 | 67.67 |
| PGSC0003DMT400006495 | Potato | mitochondrion, plastid | 32.53 | 64.78 |
| GSMUA_Achr6P14800_001 | Banana | plastid | 17.54 | 51.77 |
| HORVU3Hr1G026980.2 | Barley | nucleus, plastid | 20.99 | 45.02 |
| GSMUA_Achr4P15460_001 | Banana | mitochondrion, plastid | 23.84 | 44.41 |
| TraesCS3A01G313000.1 | Wheat | nucleus | 21.29 | 44.38 |
| TraesCS3B01G158900.1 | Wheat | nucleus | 21.14 | 44.06 |
| Solyc03g120880.2.1 | Tomato | nucleus | 32.98 | 43.82 |
| TraesCS3D01G141300.1 | Wheat | nucleus | 20.84 | 43.71 |
| Os01t0200500-01 | Rice | nucleus | 20.84 | 42.51 |
| Zm00001d008871_P001 | Maize | mitochondrion | 20.24 | 41.93 |
| EES02290 | Sorghum | nucleus, plastid | 20.24 | 41.93 |
| GSMUA_Achr4P08270_001 | Banana | mitochondrion | 17.84 | 41.75 |
| HORVU1Hr1G076010.1 | Barley | plastid | 17.09 | 34.44 |
| EES19830 | Sorghum | mitochondrion | 16.49 | 33.74 |
| TraesCS1D01G342600.1 | Wheat | plastid | 17.09 | 33.53 |
| Os05t0520100-00 | Rice | mitochondrion | 16.34 | 32.93 |
| TraesCS3B01G308400.1 | Wheat | plastid | 15.44 | 32.7 |
| HORVU3Hr1G071060.1 | Barley | plastid | 15.14 | 32.37 |
| Zm00001d038803_P001 | Maize | mitochondrion | 15.29 | 31.68 |
| TraesCS3D01G274500.1 | Wheat | plastid | 14.84 | 31.43 |
| TraesCS3A01G274800.1 | Wheat | plastid | 14.69 | 31.31 |
| Zm00001d010783_P001 | Maize | plastid | 16.19 | 31.21 |
| TraesCS1A01G340600.1 | Wheat | plastid | 15.29 | 30.18 |
Protein Annotations
| MapMan:23.5.1.1.6.5 | Gene3D:3.30.70.330 | GO:A0A078EAG0 | InterPro:CASP/CASPL | InterPro:CASP_dom | EnsemblPlants:CDX97739 |
| ProteinID:CDX97739 | ProteinID:CDX97739.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00104995001 |
| InterPro:IPR007846 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF04535 | PFAM:PF05172 | PFscan:PS51472 |
| PANTHER:PTHR11615 | PANTHER:PTHR11615:SF118 | InterPro:RBD_domain_sf | InterPro:RRM_NUP35_dom | SUPFAM:SSF54928 | TIGRFAMs:TIGR01569 |
| TMHMM:TMhelix | UniParc:UPI0004EE8AFA | SEG:seg | : | : | : |
Description
BnaA05g23400D
Coordinates
chrLK031900:-:1272452..1276066
Molecular Weight (calculated)
73254.2 Da
IEP (calculated)
9.197
GRAVY (calculated)
-0.132
Length
667 amino acids
Sequence
(BLAST)
(BLAST)
001: MCVCEIVAAC QVSQSYKTLS FWLSFSGIPR SENSKNRRLH LQRESQLPSQ SLTLDHFVPL LRFLLFRIAL VCNEHLSFEV FDLTAWIRVA VDELCSLVIM
101: SAHRTPKTGR QSLLFQDLAS PVSARRGKFS TPGQAAAVSA LWRENLGGSD LPPPPMYTLD DRSDFSPESG IADYSASPDV KSERRTPFQS SGKNVVTPGK
201: GKLEASPSFS LLSGQQQSQQ VSGSPSWWSQ SKGGGSSAEQ EDKGKGSPVE GVVQPGALVT LPPPREVARP EVQRQVIPTG NVQEEEWVTV YGFSPSDTNL
301: VLREFEKCGM IVKHVPGPRN ANWMHILYQN RSDAQKALSK TGMMINGVVI VGVKPVDPIQ RQALNERLNN QGFMPLPPPS STRDTEFNAA WGASSRPHYL
401: QNGSAFSPQP NGGAMAVPSK SMVSKFVDLM FERPPLRKLE KTLITWEPEK PHGDAMVKAT EQKQNSQTVE VTKLDIRDVI TTATRPTTYG EVNRHGGKRN
501: DVAMFVLRAM CMAASAVTVS LMVTARETSM TTLYGFEFQL HAVWSLSDSL IYLVAVSSAT VIYSLLQLIL SGTRLMRKSP VIPTRTQAWF CFLADQILGY
601: AMVSGGSAAL GVTNMNRTGI RHMPLPNFCK SLGFFCDHLA ISVVFALLSF LLLAASSILD VLHLSRN
101: SAHRTPKTGR QSLLFQDLAS PVSARRGKFS TPGQAAAVSA LWRENLGGSD LPPPPMYTLD DRSDFSPESG IADYSASPDV KSERRTPFQS SGKNVVTPGK
201: GKLEASPSFS LLSGQQQSQQ VSGSPSWWSQ SKGGGSSAEQ EDKGKGSPVE GVVQPGALVT LPPPREVARP EVQRQVIPTG NVQEEEWVTV YGFSPSDTNL
301: VLREFEKCGM IVKHVPGPRN ANWMHILYQN RSDAQKALSK TGMMINGVVI VGVKPVDPIQ RQALNERLNN QGFMPLPPPS STRDTEFNAA WGASSRPHYL
401: QNGSAFSPQP NGGAMAVPSK SMVSKFVDLM FERPPLRKLE KTLITWEPEK PHGDAMVKAT EQKQNSQTVE VTKLDIRDVI TTATRPTTYG EVNRHGGKRN
501: DVAMFVLRAM CMAASAVTVS LMVTARETSM TTLYGFEFQL HAVWSLSDSL IYLVAVSSAT VIYSLLQLIL SGTRLMRKSP VIPTRTQAWF CFLADQILGY
601: AMVSGGSAAL GVTNMNRTGI RHMPLPNFCK SLGFFCDHLA ISVVFALLSF LLLAASSILD VLHLSRN
001: MSAAAHRTPK SGRQSLLFQD LASPVSARRG KFSSPGQAAA VSALWRENFG GSDLPPPPMY TLDDRSDFSP ESGIADYSAS PDAKSDRRTP FQSSGKNIVT
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
101: PGKGKLEASP SFSLLNAQQS QQVSGSPSWW SQSKAGSSTE QDDKGKGSPV EGVVQPGALV TLPPPREVAR PEVQRQIIPT GNLDEEEWVT VYGFSPGDTN
201: LVLREFEKCG MVLKHVPGPR NANWMHILYQ NRSDAHKALN KAGMMINGVV IVGVKPVDPI QKQALNERLN NQGFMPLPPP SSTRNTARPL SRPQYLQNGS
301: AFSPQPSGGA MASPSKSMVS KFFDLMFGV
Arabidopsis Description
NUP35Nuclear pore complex protein NUP35 [Source:UniProtKB/Swiss-Prot;Acc:O04326]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.