CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 3
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	extracellular, nucleus, plasma membrane, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX84933
CDX89063
CDX89333
CDX94330
CDY03907
CDY15722
CDY27605
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G44080.1	CDX84933	AT1G27300.1	21798944
AT2G44080.1	CDY03907	AT1G27300.1	21798944
AT2G44080.1	CDY15722	AT1G27300.1	21798944
AT2G44080.1	CDY27605	AT1G27300.1	21798944
AT2G44080.1	CDX67837	AT3G60600.1	21798944
AT2G44080.1	CDX71796	AT3G60600.1	21798944
AT2G44080.1	CDX89063	AT3G60600.1	21798944
AT2G44080.1	CDY41153	AT3G60600.1	21798944
AT2G44080.1	CDY48365	AT3G60600.1	21798944
AT2G44080.1	CDX89333	AT4G26455.1	21798944
AT2G44080.1	CDX94330	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79784	Canola	plasma membrane	99.08	99.08
Bra004803.1-P	Field mustard	plasma membrane	98.17	98.17
CDY30454	Canola	cytosol, peroxisome, plastid	77.06	62.69
CDY23416	Canola	cytosol, peroxisome, plasma membrane	76.15	61.94
AT2G44080.1	Thale cress	cytosol, peroxisome, plasma membrane	75.23	60.74
CDX83441	Canola	cytosol, peroxisome, plasma membrane	75.23	59.85
CDX98398	Canola	cytosol, peroxisome, plastid	65.14	52.59
CDX67816	Canola	cytosol, peroxisome, plastid	62.39	50.0
CDX95587	Canola	cytosol	77.06	45.16

Protein Annotations

EnsemblPlants:CDY17888	EnsemblPlantsGene:GSBRNA2T00002231001	GO:A0A078FZS1	GO:GO:0005575	GO:GO:0008150	GO:GO:0016020
GO:GO:0016021	GO:GO:0040007	GO:GO:0046622	InterPro:ARGOS/ARL	PANTHER:PTHR36023	PANTHER:PTHR36023:SF3
ProteinID:CDY17888	ProteinID:CDY17888.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EEAF2E	UniProt:A0A078FZS1
MapMan:35.2	:	:	:	:	:

Description

BnaC04g03310DBnaC04g03310D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FZS1]

Coordinates

chrLK032079:-:335930..336259

Molecular Weight (calculated)

12076.2 Da

IEP (calculated)

10.354

GRAVY (calculated)

0.339

Length

109 amino acids

Sequence
(BLAST)

001: MDTTRDNRKD MSFRGSAQAP MMSKQEYIRT SSQSSKPRKL VTASYFSLES VVVLVGLTAS LLILPLILPP LPPPPFMLLL IPIGIMFLLM VLAFMPSSSN
101: ANHVTNTYM

Best Arabidopsis Sequence Match ( AT2G44080.1 )
(BLAST)

001: MIREFSSLQN DIINIQEHYS LNNNMDVRGD HNRKNTSFRG SAPAPIMGKQ ELFRTLSSQN SPRRLISASY FSLESMVVLV GLTASLLILP LILPPLPPPP
101: FMLLLIPIGI MVLLMVLAFM PSSNSKHVSS SSTFM

Arabidopsis Description

ARLARGOS-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q8RXL7]
SUBAcon: [peroxisome,cytosol,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.