Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX89333 | Canola | nucleus | 82.08 | 81.41 |
| AT4G26455.1 | Thale cress | nucleus | 53.77 | 53.99 |
| CDY17403 | Canola | nucleus | 21.38 | 38.04 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 21.18 | 37.28 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 35.03 | 28.01 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 22.0 | 27.07 |
| KRH56393 | Soybean | cytosol | 30.14 | 25.21 |
| CDY24192 | Canola | plastid | 15.27 | 24.75 |
| CDX82542 | Canola | plastid | 22.2 | 24.61 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 20.77 | 24.29 |
| KRH62532 | Soybean | endoplasmic reticulum | 28.51 | 23.93 |
| PGSC0003DMT400022426 | Potato | nucleus | 27.9 | 23.38 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.89 | 23.28 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 27.49 | 22.69 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 24.03 | 21.77 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 24.24 | 21.56 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 24.03 | 21.53 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 13.03 | 21.48 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 23.83 | 21.47 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 17.52 | 21.45 |
| PGSC0003DMT400056956 | Potato | nucleus | 26.07 | 21.4 |
| Zm00001d005997_P002 | Maize | plastid | 23.42 | 21.38 |
| GSMUA_Achr10P... | Banana | cytosol | 21.79 | 21.23 |
| Os08t0497900-01 | Rice | nucleus | 19.96 | 21.21 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 23.22 | 20.88 |
| EES14314 | Sorghum | nucleus | 21.38 | 20.75 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 12.63 | 20.53 |
| Os09t0481300-01 | Rice | nucleus | 21.38 | 19.92 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 24.03 | 19.87 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 21.38 | 19.55 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 21.38 | 19.52 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 12.22 | 19.48 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 20.98 | 18.93 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 18.94 | 18.24 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 21.18 | 18.21 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 17.11 | 18.18 |
| OQU81760 | Sorghum | nucleus | 15.48 | 17.84 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 18.33 | 17.65 |
| Zm00001d025667_P001 | Maize | cytosol | 15.89 | 15.98 |
Protein Annotations
| EnsemblPlants:CDX94330 | EnsemblPlantsGene:GSBRNA2T00157437001 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | ProteinID:CDX94330 |
| ProteinID:CDX94330.1 | SEG:seg | UniParc:UPI0004EEF0B9 | MapMan:20.4.2.1.2 | : | : |
Description
BnaC01g18540D
Coordinates
chrLK031881:-:278651..280237
Molecular Weight (calculated)
53773.5 Da
IEP (calculated)
4.515
GRAVY (calculated)
-0.665
Length
491 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLESESSAL ESIGDNGLIQ QASINTAAAA DDDDDDNGRS LDQGSFSDDS VKLVSTISGG ENETSVELDK ALNFGSCSPV LSKGRGLRKW RRIRRDLVKD
101: TSGNMENSKV LKRGLSGSAA HSHGNKQMLF QSPELEQESQ GSVNMLKSGG GYGFDDARFM AGIGFSAGVV GLGKDDDRSS KSSTPVIISS DQRGKGRVEN
201: SKKQRGESVE KENSHSSLES DSRKPSGSPM VNHKGMIGDE ADMNGETSKR NDDAEGEESI NNNNNGFSEE LDPLTEAIDG FFTLQEALEK EVQEYREIGK
301: EQIPQHHEGA SETSSPGPEI VTLVNTVEQL EIKLEETKSM LEVKESHIRE LESTTNQNKR SWGGSGNVSE TVVEDIFRQK IEAEIEYLIY SRSVDNLNHQ
401: MKLVETKESL AEEQAYETLN SLDKVQTKAA SLRNRAKDLQ NECIETTGSI KKRACKITSC FLIQLVLLLM VVMVFMSQLV PESSDIVIVP T
101: TSGNMENSKV LKRGLSGSAA HSHGNKQMLF QSPELEQESQ GSVNMLKSGG GYGFDDARFM AGIGFSAGVV GLGKDDDRSS KSSTPVIISS DQRGKGRVEN
201: SKKQRGESVE KENSHSSLES DSRKPSGSPM VNHKGMIGDE ADMNGETSKR NDDAEGEESI NNNNNGFSEE LDPLTEAIDG FFTLQEALEK EVQEYREIGK
301: EQIPQHHEGA SETSSPGPEI VTLVNTVEQL EIKLEETKSM LEVKESHIRE LESTTNQNKR SWGGSGNVSE TVVEDIFRQK IEAEIEYLIY SRSVDNLNHQ
401: MKLVETKESL AEEQAYETLN SLDKVQTKAA SLRNRAKDLQ NECIETTGSI KKRACKITSC FLIQLVLLLM VVMVFMSQLV PESSDIVIVP T
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.