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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 3
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67837
CDX70995
CDX71796
CDX88803
CDX89063
CDX92368
CDX97739
CDY09128
CDY30157
CDY35676
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17340.1 CDX97739 AT3G16310.1 21798944
AT4G17340.1 CDY30157 AT3G16310.1 21798944
AT4G17340.1 CDX67837 AT3G60600.1 21798944
AT4G17340.1 CDX71796 AT3G60600.1 21798944
AT4G17340.1 CDX89063 AT3G60600.1 21798944
AT4G17340.1 CDY41153 AT3G60600.1 21798944
AT4G17340.1 CDY48365 AT3G60600.1 21798944
AT4G17340.1 CDX70995 AT5G22290.1 21798944
AT4G17340.1 CDX88803 AT5G22290.1 21798944
AT4G17340.1 CDX92368 AT5G22290.1 21798944
AT4G17340.1 CDY09128 AT5G22290.1 21798944
AT4G17340.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra026245.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 100.0 100.0
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 98.8 98.8
AT4G17340.1 Thale cress golgi, plasma membrane, vacuole 96.8 96.8
CDY51678 Canola plasma membrane, vacuole 90.8 90.8
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 90.4 90.04
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 90.0 89.64
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 74.8 89.05
Solyc06g060760.2.1 Tomato endoplasmic reticulum 85.2 85.2
PGSC0003DMT400030994 Potato endoplasmic reticulum, plasma membrane, vacuole 84.8 84.8
VIT_00s0229g00130.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 84.0 84.0
GSMUA_Achr11P... Banana endoplasmic reticulum, plasma membrane 81.2 81.53
GSMUA_Achr11P... Banana extracellular, plasma membrane 81.2 81.53
KRH28112 Soybean mitochondrion 78.8 79.12
KRH77347 Soybean mitochondrion 78.4 78.71
Zm00001d002738_P001 Maize plasma membrane 78.0 78.63
Os02t0658100-01 Rice vacuole 64.4 78.16
Zm00001d017485_P002 Maize endoplasmic reticulum, extracellular, plasma membrane 77.6 77.6
EES12617 Sorghum plasma membrane 77.2 77.51
KXG31086 Sorghum golgi, plasma membrane, vacuole 77.2 77.51
TraesCS6A01G250300.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 77.2 77.51
TraesCS6D01G232100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 77.2 77.51
HORVU0Hr1G032130.2 Barley endoplasmic reticulum, plasma membrane, vacuole 76.8 77.11
HORVU6Hr1G062980.1 Barley endoplasmic reticulum, plasma membrane, vacuole 76.8 77.11
Zm00001d051362_P001 Maize plasma membrane 76.8 77.11
CDX82410 Canola plasma membrane 76.4 76.71
TraesCS2A01G414100.1 Wheat plasma membrane 76.0 76.61
TraesCS2B01G433200.1 Wheat plasma membrane 76.0 76.61
Zm00001d026177_P001 Maize extracellular 76.0 76.61
TraesCS6B01G275100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 76.0 76.31
TraesCS2D01G411400.1 Wheat plasma membrane 75.2 75.81
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 74.4 74.7
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 74.4 74.7
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 73.2 73.79
CDX97733 Canola endoplasmic reticulum, extracellular 72.8 73.39
CDX75873 Canola extracellular, golgi, vacuole 76.4 69.45
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 39.2 69.01
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 69.2 68.38
CDY66645 Canola plastid 59.2 66.97
CDY67380 Canola plastid 59.2 66.97
CDX83623 Canola golgi, plasma membrane, plastid 66.0 65.22
CDY13639 Canola plasma membrane 65.6 64.82
CDY28539 Canola plasma membrane 65.2 64.43
CDY48983 Canola plasma membrane 65.2 64.43
CDY53270 Canola plasma membrane 62.4 62.15
CDX77009 Canola cytosol, plasma membrane, vacuole 52.8 53.01
CDY07142 Canola cytosol 53.2 52.78
CDY69446 Canola cytosol 53.2 52.78
CDY35336 Canola extracellular 29.6 51.75
CDX68239 Canola cytosol 54.4 51.32
CDY11123 Canola cytosol 54.4 51.32
CDY66321 Canola plasma membrane 54.4 51.13
CDY48045 Canola golgi, mitochondrion, plasma membrane 54.0 50.75
CDX72962 Canola plasma membrane 53.2 50.19
CDX96453 Canola cytosol 52.8 49.81
CDX81850 Canola golgi, mitochondrion, plasma membrane 52.8 49.44
CDY21731 Canola golgi, mitochondrion, plasma membrane 52.8 49.44
CDY26214 Canola plasma membrane 51.6 48.31
CDY19176 Canola plasma membrane 51.2 47.94
CDY47413 Canola mitochondrion, plastid 42.8 41.47
CDX99048 Canola mitochondrion, plastid 42.4 41.09
CDX72515 Canola golgi, plasma membrane 35.2 34.65
CDY66912 Canola extracellular 27.6 33.5
CDX69112 Canola plasma membrane 37.2 33.1
CDX76314 Canola cytosol 37.2 33.1
CDY52648 Canola plasma membrane 37.2 33.1
CDY17511 Canola plasma membrane 36.8 32.74
CDY70391 Canola extracellular, golgi 20.8 32.7
CDY09192 Canola plasma membrane 33.2 32.05
CDX89115 Canola plasma membrane 28.8 32.0
CDX71032 Canola plasma membrane 32.8 31.54
CDX88767 Canola plasma membrane 32.8 31.54
CDX78177 Canola plasma membrane 36.0 31.36
CDY56697 Canola plasma membrane 36.0 31.36
CDY07681 Canola plasma membrane 36.0 31.25
CDY31523 Canola plasma membrane 32.4 31.15
CDY14415 Canola cytosol, peroxisome, plasma membrane 35.6 30.9
CDX67611 Canola plasma membrane 35.2 30.77
CDY07519 Canola plasma membrane 35.2 30.77
CDY46759 Canola plasma membrane 34.8 30.53
CDY07221 Canola cytosol, peroxisome, plasma membrane 34.8 30.42
CDY51161 Canola cytosol, peroxisome, plasma membrane 34.8 30.42
CDY10936 Canola plasma membrane 34.8 30.31
CDY13298 Canola plasma membrane 34.8 30.31
CDX74334 Canola cytosol, peroxisome, plasma membrane 34.8 30.21
CDX91341 Canola plasma membrane 34.4 30.18
CDY53629 Canola cytosol 31.2 30.12
CDX78265 Canola plasma membrane 34.4 30.07
CDY38017 Canola plasma membrane 34.4 30.07
CDY46758 Canola plasma membrane 34.0 30.04
CDX91911 Canola cytosol, peroxisome, plasma membrane 34.4 29.86
CDX91340 Canola plasma membrane 34.0 29.82
CDX73446 Canola peroxisome 34.0 29.72
CDX90046 Canola cytosol, peroxisome, plasma membrane 34.0 29.72
CDX94185 Canola plasma membrane 34.0 29.62
CDX71738 Canola plasma membrane 33.6 29.37
CDX74777 Canola cytosol, peroxisome, plasma membrane 33.6 29.37
CDX83385 Canola cytosol, peroxisome, plasma membrane 33.6 29.37
CDY18886 Canola cytosol, peroxisome, plasma membrane 33.6 29.37
CDY27346 Canola cytosol, peroxisome, plasma membrane 33.6 29.37
CDY37078 Canola cytosol, peroxisome, plasma membrane 33.6 29.37
CDY48920 Canola plasma membrane 33.6 29.37
CDX95670 Canola cytosol, peroxisome, plasma membrane 33.2 29.02
CDX74983 Canola cytosol, peroxisome, plasma membrane 22.4 28.43
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.0 27.42
CDY15165 Canola plastid 34.8 26.85
CDY66913 Canola cytosol, mitochondrion, nucleus 1.6 8.7
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078JHF6UniProt:A0A078JHF6InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlants:CDY65121ProteinID:CDY65121ProteinID:CDY65121.1GO:GO:0003674GO:GO:0005215GO:GO:0005575
GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085
EnsemblPlantsGene:GSBRNA2T00044202001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF257SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelix
UniParc:UPI0001B35351SEG:seg::::
Description
BnaA01g35340DBnaA01g35340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHF6]
Coordinates
chrLK034663:-:16876..17988
Molecular Weight (calculated)
24994.6 Da
IEP (calculated)
4.945
GRAVY (calculated)
1.027
Length
250 amino acids
Sequence
(BLAST)
001: MVKIAIGSLG DSFSVASLKA YLSEFIATLL FVFAGVGSAI AFGKLTSNAA LDPAGLVAVA VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT
101: GFFYWIAQCL GSIVACLLLA FVTNGESVPT HGVAAGLGAV EGIVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY APAPTTESYP
Best Arabidopsis Sequence Match ( AT4G17340.1 )
(BLAST)
001: MVKIEIGSVG DSFSVASLKA YLSEFIATLL FVFAGVGSAL AFAKLTSDAA LDPAGLVAVA VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT
101: GFFYWIAQCL GSIVACLLLV FVTNGESVPT HGVAAGLGAI EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY APAPTTESYP
Arabidopsis Description
TIP2-2TIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UVY8]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.