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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:
  • extracellular 3
  • endoplasmic reticulum 4
  • vacuole 5
  • plasma membrane 4
  • golgi 3
  • plastid 2
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:plastid, secretory
BaCelLo:secretory
EpiLoc:plastid
iPSORT:plastid
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
PProwler:secretory
TargetP:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra002403.1-P
Bra003423.1-P
Bra006619.1-P
Bra007547.1-P
Bra014481.1-P
Bra020182.1-P
Bra027174.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G17340.1 Bra027174.1-P AT3G16310.1 21798944
AT4G17340.1 Bra003423.1-P AT3G60600.1 21798944
AT4G17340.1 Bra007547.1-P AT3G60600.1 21798944
AT4G17340.1 Bra014481.1-P AT3G60600.1 21798944
AT4G17340.1 Bra002403.1-P AT5G22290.1 21798944
AT4G17340.1 Bra006619.1-P AT5G22290.1 21798944
AT4G17340.1 Bra020182.1-P AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 100.0 100.0
AT4G17340.1 Thale cress golgi, plasma membrane, vacuole 96.8 96.8
Bra022131.1-P Field mustard extracellular 73.6 90.2
Bra024943.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 89.6 89.24
Solyc06g060760.2.1 Tomato endoplasmic reticulum 85.2 85.2
PGSC0003DMT400030994 Potato endoplasmic reticulum, plasma membrane, vacuole 84.8 84.8
VIT_00s0229g00130.t01 Wine grape endoplasmic reticulum, plasma membrane, vacuole 84.0 84.0
GSMUA_Achr11P... Banana extracellular, plasma membrane 81.2 81.53
GSMUA_Achr11P... Banana endoplasmic reticulum, plasma membrane 81.2 81.53
KRH28112 Soybean mitochondrion 78.8 79.12
KRH77347 Soybean mitochondrion 78.4 78.71
Zm00001d002738_P001 Maize plasma membrane 78.0 78.63
Os02t0658100-01 Rice vacuole 64.4 78.16
Zm00001d017485_P002 Maize endoplasmic reticulum, extracellular, plasma membrane 77.6 77.6
KXG31086 Sorghum golgi, plasma membrane, vacuole 77.2 77.51
EES12617 Sorghum plasma membrane 77.2 77.51
TraesCS6A01G250300.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 77.2 77.51
TraesCS6D01G232100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 77.2 77.51
HORVU6Hr1G062980.1 Barley endoplasmic reticulum, plasma membrane, vacuole 76.8 77.11
Zm00001d051362_P001 Maize plasma membrane 76.8 77.11
HORVU0Hr1G032130.2 Barley endoplasmic reticulum, plasma membrane, vacuole 76.8 77.11
Zm00001d026177_P001 Maize extracellular 76.0 76.61
TraesCS2B01G433200.1 Wheat plasma membrane 76.0 76.61
TraesCS2A01G414100.1 Wheat plasma membrane 76.0 76.61
Bra001626.1-P Field mustard endoplasmic reticulum, plasma membrane, vacuole 76.0 76.31
TraesCS6B01G275100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 76.0 76.31
TraesCS2D01G411400.1 Wheat plasma membrane 75.2 75.81
Bra021171.1-P Field mustard endoplasmic reticulum, extracellular, vacuole 62.0 73.81
Bra027181.1-P Field mustard endoplasmic reticulum, extracellular, plasma membrane 72.8 73.39
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 39.2 69.01
Bra025210.1-P Field mustard plasma membrane 65.2 64.43
Bra032937.1-P Field mustard plasma membrane 65.2 64.43
Bra017222.1-P Field mustard cytosol 64.4 64.14
Bra034271.1-P Field mustard cytosol, plasma membrane, vacuole 52.8 53.01
Bra037415.1-P Field mustard cytosol 53.2 52.78
Bra008079.1-P Field mustard golgi, mitochondrion, plasma membrane 54.0 50.75
Bra016014.1-P Field mustard cytosol 53.2 50.19
Bra031005.1-P Field mustard golgi, mitochondrion, plasma membrane 52.8 49.44
Bra025947.1-P Field mustard cytosol, golgi, plasma membrane 52.0 48.69
Bra018148.1-P Field mustard extracellular, plasma membrane, plastid 42.8 41.96
Bra011585.1-P Field mustard plasma membrane 37.2 33.1
Bra034675.1-P Field mustard cytosol, peroxisome, plasma membrane 36.8 32.74
Bra017697.1-P Field mustard cytosol 36.4 32.38
Bra020238.1-P Field mustard plasma membrane 36.4 32.16
Bra006650.1-P Field mustard plasma membrane 36.4 31.93
Bra006997.1-P Field mustard plasma membrane 36.0 31.36
Bra000111.1-P Field mustard plasma membrane 36.0 31.25
Bra005216.1-P Field mustard cytosol, golgi, plasma membrane 28.8 31.17
Bra002462.1-P Field mustard cytosol 32.0 30.77
Bra023103.1-P Field mustard plasma membrane 34.8 30.53
Bra003196.1-P Field mustard plasma membrane 34.8 30.42
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 34.8 30.21
Bra032644.1-P Field mustard plasma membrane 34.4 30.07
Bra007100.1-P Field mustard plasma membrane 34.4 30.07
Bra023102.1-P Field mustard plasma membrane 34.0 30.04
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 34.4 29.97
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 34.0 29.72
Bra014437.1-P Field mustard plasma membrane 33.2 29.02
Bra007603.1-P Field mustard plasma membrane 33.2 29.02
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 33.2 29.02
Bra005215.1-P Field mustard cytosol, peroxisome, plasma membrane 26.4 27.73
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 29.6 26.43
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlantsGene:Bra026245EnsemblPlants:Bra026245.1
EnsemblPlants:Bra026245.1-PGO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0006810GO:GO:0008150GO:GO:0009507
GO:GO:0009536GO:GO:0009705GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0042807
GO:GO:0055085InterPro:IPR023271UniProt:M4EBT6InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF257SUPFAM:SSF81338TIGRFAMs:TIGR00861
TMHMM:TMhelixUniParc:UPI0001B35351SEG:seg:::
Description
AT4G17340 (E=4e-116) TIP2;2, DELTA-TIP2 | TIP2;2 (TONOPLAST INTRINSIC PROTEIN 2;2); water channel
Coordinates
chrA01:-:10435937..10436811
Molecular Weight (calculated)
24994.6 Da
IEP (calculated)
4.945
GRAVY (calculated)
1.027
Length
250 amino acids
Sequence
(BLAST)
001: MVKIAIGSLG DSFSVASLKA YLSEFIATLL FVFAGVGSAI AFGKLTSNAA LDPAGLVAVA VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT
101: GFFYWIAQCL GSIVACLLLA FVTNGESVPT HGVAAGLGAV EGIVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY APAPTTESYP
Best Arabidopsis Sequence Match ( AT4G17340.1 )
(BLAST)
001: MVKIEIGSVG DSFSVASLKA YLSEFIATLL FVFAGVGSAL AFAKLTSDAA LDPAGLVAVA VAHAFALFVG VSIAANISGG HLNPAVTLGL AVGGNITVIT
101: GFFYWIAQCL GSIVACLLLV FVTNGESVPT HGVAAGLGAI EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSQIWIYWVG PLVGGALAGL IYGDVFIGSY APAPTTESYP
Arabidopsis Description
TIP2-2TIP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UVY8]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.