Factsheet for Bra001626.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 3
golgi 3
plasma membrane 4
endoplasmic reticulum 4
vacuole 6

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001626.1-P
Bra006997.1-P
Bra008079.1-P
Bra012567.1-P
Bra013361.1-P
Bra016014.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G16240.1	Bra008079.1-P	AT1G73190.1	23163742
AT3G16240.1	Bra016014.1-P	AT1G73190.1	23163742
AT3G16240.1	Bra001626.1-P	AT3G16240.1	23163742
AT3G16240.1	Bra006997.1-P	AT3G53420.1	23163742
AT3G16240.1	Bra012567.1-P	AT4G19030.1	21798944
AT3G16240.1	Bra013361.1-P	AT4G19030.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX82410	Canola	plasma membrane	98.8	98.8
AT3G16240.1	Thale cress	plasma membrane	95.18	94.8
Bra021171.1-P	Field mustard	endoplasmic reticulum, extracellular, vacuole	79.52	94.29
Bra027181.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	93.57	93.95
CDX75873	Canola	extracellular, golgi, vacuole	98.39	89.09
Solyc12g044330.1.1	Tomato	plastid	83.94	84.27
KRH09912	Soybean	endoplasmic reticulum, plasma membrane, vacuole	81.53	82.19
KRG93712	Soybean	plasma membrane, vacuole	77.11	81.01
KRH23420	Soybean	plasma membrane, vacuole	80.32	80.97
GSMUA_Achr6P05830_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	79.12	80.41
GSMUA_Achr10P...	Banana	endoplasmic reticulum, plasma membrane, plastid, vacuole	78.31	80.25
GSMUA_Achr9P28940_001	Banana	plasma membrane	78.71	80.0
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	77.91	77.91
Os06t0336200-01	Rice	nucleus	76.71	77.02
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	76.31	76.0
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	75.9	75.9
Solyc06g066560.1.1	Tomato	mitochondrion	82.73	75.46
EER89797	Sorghum	plasma membrane	75.1	75.4
TraesCS7B01G243000.1	Wheat	plasma membrane	74.3	74.6
HORVU7Hr1G081770.8	Barley	plasma membrane	74.3	74.3
TraesCS7A01G331300.1	Wheat	unclear	73.49	73.79
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	73.9	73.31
Bra022131.1-P	Field mustard	extracellular	59.84	73.04
TraesCS7D01G339600.1	Wheat	plasma membrane	73.9	65.95
Bra032937.1-P	Field mustard	plasma membrane	64.26	63.24
Bra025210.1-P	Field mustard	plasma membrane	63.05	62.06
Bra017222.1-P	Field mustard	cytosol	62.25	61.75
Bra037415.1-P	Field mustard	cytosol	58.23	57.54
Bra034271.1-P	Field mustard	cytosol, plasma membrane, vacuole	52.61	52.61
Bra016014.1-P	Field mustard	cytosol	53.41	50.19
Bra008079.1-P	Field mustard	golgi, mitochondrion, plasma membrane	53.41	50.0
Bra031005.1-P	Field mustard	golgi, mitochondrion, plasma membrane	52.21	48.69
Bra025947.1-P	Field mustard	cytosol, golgi, plasma membrane	51.0	47.57
Bra018148.1-P	Field mustard	extracellular, plasma membrane, plastid	41.77	40.78
Bra005216.1-P	Field mustard	cytosol, golgi, plasma membrane	32.53	35.06
Bra020238.1-P	Field mustard	plasma membrane	39.36	34.63
Bra011585.1-P	Field mustard	plasma membrane	38.55	34.16
Bra006650.1-P	Field mustard	plasma membrane	38.96	34.04
Bra017697.1-P	Field mustard	cytosol	38.15	33.81
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	38.15	33.81
Bra023102.1-P	Field mustard	plasma membrane	38.15	33.57
Bra006997.1-P	Field mustard	plasma membrane	38.55	33.45
Bra023103.1-P	Field mustard	plasma membrane	38.15	33.33
Bra002462.1-P	Field mustard	cytosol	34.54	33.08
Bra000111.1-P	Field mustard	plasma membrane	38.15	32.99
Bra003196.1-P	Field mustard	plasma membrane	37.75	32.87
Bra007100.1-P	Field mustard	plasma membrane	37.35	32.52
Bra000974.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.95	31.94
Bra005215.1-P	Field mustard	cytosol, peroxisome, plasma membrane	30.12	31.51
Bra004950.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.14	31.47
Bra032644.1-P	Field mustard	plasma membrane	36.14	31.47
Bra019307.1-P	Field mustard	cytosol, peroxisome, plasma membrane	36.14	31.36
Bra014437.1-P	Field mustard	plasma membrane	35.74	31.12
Bra007603.1-P	Field mustard	plasma membrane	35.74	31.12
Bra033248.1-P	Field mustard	cytosol, peroxisome, plasma membrane	35.74	31.12
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	31.73	28.21

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	EnsemblPlantsGene:Bra001626	EnsemblPlants:Bra001626.1
EnsemblPlants:Bra001626.1-P	GO:GO:0000326	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773
GO:GO:0005774	GO:GO:0005794	GO:GO:0005886	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0009505	GO:GO:0009506	GO:GO:0009507	GO:GO:0009536	GO:GO:0009705	GO:GO:0009941
GO:GO:0015200	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0030312
GO:GO:0042802	GO:GO:0042807	GO:GO:0055085	InterPro:IPR023271	UniProt:M4CBP6	InterPro:MIP
InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF257
SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0002540AC0	SEG:seg	:

Description

AT3G16240 (E=9e-122) DELTA-TIP, TIP2;1, DELTA-TIP1, AQP1, ATTIP2;1 | DELTA-TIP; ammonia transporter/ methylammonium transmembrane transporter/ water channel

Coordinates

chrA03:+:17513686..17515004

Molecular Weight (calculated)

24887.4 Da

IEP (calculated)

5.952

GRAVY (calculated)

1.010

Length

249 amino acids

Sequence
(BLAST)

001: MAGIAFGSFD DSFSLASLKA YLAEFISTLL FVFAGVGSAI AYGKLTSDAA LDTSGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL ALGGQITLIT
101: GVFYWIAQLL GSTAACFLLK FVTGGLAVPT HSVAAGLGAI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVASGG FSGHWVFWVG PLIGGGLAGL IYGNVFMSSS EHVPLASDF

Best Arabidopsis Sequence Match ( AT3G16240.1 )
(BLAST)

001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF

Arabidopsis Description

TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.