Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 6
- plasma membrane 4
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_09s0002g04020.t01 | |
| VIT_10s0003g01830.t01 | |
| VIT_16s0039g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G16240.1 | VIT_16s0039g00220.t01 | AT1G73190.1 | 23163742 |
| AT3G16240.1 | VIT_09s0002g04020.t01 | AT3G16240.1 | 23163742 |
| AT3G16240.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH44312 | Soybean | extracellular | 78.31 | 78.63 |
| KRH47241 | Soybean | mitochondrion | 77.51 | 77.82 |
| GSMUA_Achr6P05830_001 | Banana | endoplasmic reticulum, extracellular, plasma membrane | 75.9 | 77.14 |
| CDY20190 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 76.71 | 76.71 |
| CDY63821 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 76.71 | 76.71 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum, plasma membrane, plastid, vacuole | 74.7 | 76.54 |
| GSMUA_Achr9P28940_001 | Banana | plasma membrane | 75.1 | 76.33 |
| PGSC0003DMT400042613 | Potato | cytosol, extracellular, plasma membrane | 76.31 | 76.31 |
| CDX82410 | Canola | plasma membrane | 76.31 | 76.31 |
| CDY30146 | Canola | endoplasmic reticulum, extracellular, plasma membrane | 75.9 | 76.21 |
| Bra021171.1-P | Field mustard | endoplasmic reticulum, extracellular, vacuole | 64.26 | 76.19 |
| AT3G16240.1 | Thale cress | plasma membrane | 76.31 | 76.0 |
| Bra001626.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 75.9 | 75.9 |
| KRH09912 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 75.1 | 75.71 |
| CDX97733 | Canola | endoplasmic reticulum, extracellular | 75.1 | 75.4 |
| Solyc12g044330.1.1 | Tomato | plastid | 75.1 | 75.4 |
| Bra027181.1-P | Field mustard | endoplasmic reticulum, extracellular, plasma membrane | 75.1 | 75.4 |
| KRH23420 | Soybean | plasma membrane, vacuole | 74.3 | 74.9 |
| KRG93712 | Soybean | plasma membrane, vacuole | 71.08 | 74.68 |
| PGSC0003DMT400068047 | Potato | cytosol, extracellular, plastid, vacuole | 73.9 | 74.19 |
| Os06t0336200-01 | Rice | nucleus | 72.69 | 72.98 |
| EER89797 | Sorghum | plasma membrane | 72.29 | 72.58 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 72.29 | 72.0 |
| TraesCS7B01G243000.1 | Wheat | plasma membrane | 70.68 | 70.97 |
| TraesCS7A01G331300.1 | Wheat | unclear | 70.28 | 70.56 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 69.88 | 69.88 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 34.54 | 69.35 |
| CDX75873 | Canola | extracellular, golgi, vacuole | 76.31 | 69.09 |
| PGSC0003DMT400006558 | Potato | endoplasmic reticulum, plasma membrane | 68.27 | 68.27 |
| Solyc06g066560.1.1 | Tomato | mitochondrion | 74.7 | 68.13 |
| CDY47816 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 69.08 | 67.98 |
| TraesCS7D01G339600.1 | Wheat | plasma membrane | 70.68 | 63.08 |
| VIT_08s0007g04780.t01 | Wine grape | cytosol | 63.05 | 62.55 |
| VIT_13s0019g00330.t01 | Wine grape | cytosol, plasma membrane, vacuole | 62.25 | 61.75 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 60.24 | 59.76 |
| VIT_06s0004g04120.t01 | Wine grape | cytosol, plasma membrane, vacuole | 62.25 | 57.84 |
| VIT_16s0022g00330.t01 | Wine grape | cytosol, extracellular, plasma membrane, plastid | 51.41 | 51.41 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 53.01 | 50.97 |
| VIT_15s0021g02420.t01 | Wine grape | extracellular | 48.59 | 48.21 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 47.39 | 39.2 |
| VIT_18s0001g06480.t01 | Wine grape | cytosol, extracellular, vacuole | 18.47 | 32.62 |
| VIT_03s0038g02520.t01 | Wine grape | plasma membrane | 35.74 | 31.9 |
| VIT_06s0004g02850.t01 | Wine grape | plasma membrane | 35.74 | 31.79 |
| VIT_13s0019g04280.t01 | Wine grape | plasma membrane | 35.34 | 30.99 |
| VIT_08s0040g01890.t01 | Wine grape | plasma membrane | 35.34 | 30.66 |
| VIT_12s0034g00250.t01 | Wine grape | cytosol, extracellular, plastid | 14.06 | 29.41 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 33.73 | 29.27 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 33.33 | 29.02 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 33.33 | 29.02 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 30.92 | 26.92 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:100233028 | wikigene:100233028 | MapMan:24.3.1.3 | ProteinID:ABH09331 | ProteinID:ABH09331.1 |
| ProteinID:ABN14354 | ProteinID:ABN14354.1 | ProteinID:AEZ35021 | ProteinID:AEZ35021.1 | ProteinID:AEZ35022 | ProteinID:AEZ35022.1 |
| EMBL:AJ289866 | EMBL:AM464761 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | ProteinID:CAB95746 | ProteinID:CAB95746.2 |
| ProteinID:CAN70336 | ProteinID:CAN70336.1 | ProteinID:CCB59452 | ProteinID:CCB59452.1 | EMBL:DQ834703 | EMBL:EF364439 |
| EMBL:FN596494 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 | EMBL:HQ913640 | EMBL:HQ913641 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF257 | UniProt:Q0MX09 | SUPFAM:SSF81338 | TIGR:TC58032 | TIGRFAMs:TIGR00861 | EntrezGene:TIP2;1 |
| wikigene:TIP2;1 | TMHMM:TMhelix | UniParc:UPI0000DBEA32 | ArrayExpress:VIT_09s0002g04020 | EnsemblPlantsGene:VIT_09s0002g04020 | EnsemblPlants:VIT_09s0002g04020.t01 |
| unigene:Vvi.554 | : | : | : | : | : |
Description
Aquaporin TIP2;1 [Source:UniProtKB/TrEMBL;Acc:Q0MX09]
Coordinates
chr9:-:3712870..3714177
Molecular Weight (calculated)
25481.3 Da
IEP (calculated)
6.338
GRAVY (calculated)
0.915
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MPKIAFGRFD DSFSLASFKA YLAEFHSTIL FVFAGVGSVM AYNKLTSDAA LDPAGLVAVA VAHGFALFVA VAISANISGG HVNPAVTFGL VVGGQITILT
101: GILYWIAQLV GSILACFLLK LVTGGLTTPV HSLGAGVGVI DAIVFEIVIT FALVYTVYAT AVDPKKGSLG IIAPIAIGLV VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FKDNWIYWVG PLIGGGMGGS VYAIMYMGSD HQPLASSEF
101: GILYWIAQLV GSILACFLLK LVTGGLTTPV HSLGAGVGVI DAIVFEIVIT FALVYTVYAT AVDPKKGSLG IIAPIAIGLV VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FKDNWIYWVG PLIGGGMGGS VYAIMYMGSD HQPLASSEF
001: MAGVAFGSFD DSFSLASLRA YLAEFISTLL FVFAGVGSAI AYAKLTSDAA LDTPGLVAIA VCHGFALFVA VAIGANISGG HVNPAVTFGL AVGGQITVIT
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
101: GVFYWIAQLL GSTAACFLLK YVTGGLAVPT HSVAAGLGSI EGVVMEIIIT FALVYTVYAT AADPKKGSLG TIAPLAIGLI VGANILAAGP FSGGSMNPAR
201: SFGPAVAAGD FSGHWVYWVG PLIGGGLAGL IYGNVFMGSS EHVPLASADF
Arabidopsis Description
TIP2-1Aquaporin TIP2-1 [Source:UniProtKB/Swiss-Prot;Acc:Q41951]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.