Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- vacuole 3
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0010g03800.t01 | |
| VIT_06s0080g00970.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | VIT_01s0010g03800.t01 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 58.14 | 70.85 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 57.48 | 70.04 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 56.15 | 68.7 |
| KRH52727 | Soybean | cytosol | 55.81 | 68.29 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 55.81 | 67.47 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 55.48 | 67.07 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 55.15 | 66.67 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 55.15 | 66.67 |
| CDY35336 | Canola | extracellular | 30.23 | 63.64 |
| EES02191 | Sorghum | cytosol | 49.83 | 59.52 |
| TraesCS3B01G182200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 49.5 | 59.36 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 49.17 | 58.96 |
| TraesCS3D01G163400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 48.17 | 58.94 |
| TraesCS3A01G434600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 46.18 | 58.65 |
| TraesCS3B01G182400.1 | Wheat | plasma membrane | 46.51 | 56.45 |
| TraesCS3A01G155800.1 | Wheat | plasma membrane | 46.51 | 56.45 |
| Zm00001d039713_P001 | Maize | plasma membrane | 45.18 | 54.62 |
| Zm00001d039293_P001 | Maize | plastid | 51.83 | 54.36 |
| TraesCS4B01G349500.1 | Wheat | plasma membrane | 45.18 | 53.33 |
| TraesCS4D01G344300.1 | Wheat | plasma membrane | 45.18 | 53.33 |
| TraesCS5A01G518300.1 | Wheat | golgi, plasma membrane, vacuole | 45.18 | 53.12 |
| KXG31483 | Sorghum | extracellular, golgi, plasma membrane | 43.85 | 52.17 |
| Os01t0232100-01 | Rice | cytosol, endoplasmic reticulum, extracellular | 44.19 | 51.95 |
| Zm00001d015518_P001 | Maize | endoplasmic reticulum, extracellular | 18.27 | 51.89 |
| Zm00001d019676_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 18.27 | 51.89 |
| Zm00001d037779_P001 | Maize | cytosol, plasma membrane, vacuole | 43.85 | 51.76 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 42.52 | 51.0 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 42.86 | 50.79 |
| VIT_08s0007g04780.t01 | Wine grape | cytosol | 42.19 | 50.6 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 42.52 | 50.2 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 41.53 | 50.0 |
| Zm00001d020747_P001 | Maize | extracellular | 17.61 | 49.53 |
| VIT_13s0019g00330.t01 | Wine grape | cytosol, plasma membrane, vacuole | 39.87 | 47.81 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 19.6 | 47.58 |
| VIT_09s0002g04020.t01 | Wine grape | plasma membrane, vacuole | 39.2 | 47.39 |
| VIT_06s0004g04120.t01 | Wine grape | cytosol, plasma membrane, vacuole | 42.19 | 47.39 |
| HORVU4Hr1G085250.2 | Barley | plastid | 45.85 | 45.85 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 38.21 | 44.4 |
| EES17913 | Sorghum | cytosol, plastid | 46.18 | 44.27 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 45.85 | 43.95 |
| VIT_16s0022g00330.t01 | Wine grape | cytosol, extracellular, plasma membrane, plastid | 36.21 | 43.78 |
| Zm00001d010410_P001 | Maize | plasma membrane, plastid | 45.18 | 43.73 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 43.52 | 41.2 |
| VIT_15s0021g02420.t01 | Wine grape | extracellular | 31.56 | 37.85 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 27.57 | 30.97 |
| VIT_06s0004g02850.t01 | Wine grape | plasma membrane | 27.24 | 29.29 |
| VIT_08s0040g01890.t01 | Wine grape | plasma membrane | 26.91 | 28.22 |
| VIT_13s0019g04280.t01 | Wine grape | plasma membrane | 26.58 | 28.17 |
| VIT_03s0038g02520.t01 | Wine grape | plasma membrane | 25.58 | 27.6 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 24.58 | 25.87 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 24.25 | 25.52 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 24.25 | 25.52 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 23.92 | 25.09 |
| VIT_18s0001g06480.t01 | Wine grape | cytosol, extracellular, vacuole | 11.63 | 24.82 |
| VIT_12s0034g00250.t01 | Wine grape | cytosol, extracellular, plastid | 8.97 | 22.69 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:100252631 | wikigene:100252631 | MapMan:24.3.1.3 | EMBL:AM430844 | InterPro:Aquaporin-like |
| InterPro:Aquaporin_transptr | ProteinID:CAN66944 | ProteinID:CAN66944.1 | ProteinID:CCB46709 | ProteinID:CCB46709.1 | UniProt:F6H3E5 |
| EMBL:FN595231 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 | InterPro:IPR023271 | EntrezGene:LOC100252631 | wikigene:LOC100252631 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF186 | SUPFAM:SSF81338 | TIGR:TC59205 | TIGR:TC64902 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| UniParc:UPI0001983116 | ArrayExpress:VIT_04s0008g03550 | EnsemblPlantsGene:VIT_04s0008g03550 | EnsemblPlants:VIT_04s0008g03550.t01 | unigene:Vvi.18962 | RefSeq:XP_002283964 |
| RefSeq:XP_002283964.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr4:-:2903920..2905762
Molecular Weight (calculated)
32122.2 Da
IEP (calculated)
6.412
GRAVY (calculated)
0.483
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MAHLLISWKN KVPPSIEVKE EADSLYNSPI FDPAKPKPDS TTPHSSLNMA KMALGSGREF AQPDCIRALV MEFIVTFLFV FAGVGSAMAT EKLKGDSLDS
101: LFFVAMAHAL VVAVMVSAAL QISGGHLNPA VTLGLCVGGH ITVVRSVLYF IDQCLASTVA CILLKFLTGG RATPVHTLAS GVGCLQGVML EFILTFSLLF
201: TVYANIVSAQ KSAHIDGLGP MITGLVVGAN VMAGGAFSGA SMNPARSFGP ALVSWDWTNH WVYWVGPLVG GAVAGFVYEN FFINRPHLRL PTRDEEEEEG
301: F
101: LFFVAMAHAL VVAVMVSAAL QISGGHLNPA VTLGLCVGGH ITVVRSVLYF IDQCLASTVA CILLKFLTGG RATPVHTLAS GVGCLQGVML EFILTFSLLF
201: TVYANIVSAQ KSAHIDGLGP MITGLVVGAN VMAGGAFSGA SMNPARSFGP ALVSWDWTNH WVYWVGPLVG GAVAGFVYEN FFINRPHLRL PTRDEEEEEG
301: F
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.