Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- nucleus 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G084420.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | HORVU2Hr1G084420.1 | AT1G27300.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G163400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 65.41 | 84.55 |
| TraesCS3B01G182200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 66.35 | 84.06 |
| TraesCS3A01G434600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 61.64 | 82.7 |
| EES02191 | Sorghum | cytosol | 56.6 | 71.43 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 55.03 | 69.72 |
| Zm00001d039293_P001 | Maize | plastid | 57.23 | 63.41 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 49.06 | 62.65 |
| CDY35336 | Canola | extracellular | 24.84 | 55.24 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 42.45 | 54.88 |
| KRH52727 | Soybean | cytosol | 42.14 | 54.47 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 42.14 | 54.25 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 42.45 | 54.22 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 41.51 | 53.44 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 41.82 | 53.41 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 41.82 | 53.41 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 41.51 | 51.76 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 38.05 | 47.64 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 37.42 | 47.6 |
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 36.48 | 46.59 |
| HORVU6Hr1G062980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 36.48 | 46.59 |
| HORVU3Hr1G116790.2 | Barley | vacuole | 36.79 | 46.43 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 41.2 | 43.52 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 35.53 | 42.97 |
| HORVU4Hr1G085250.2 | Barley | plastid | 40.25 | 42.52 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 33.02 | 42.17 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 27.36 | 32.46 |
| HORVU2Hr1G089970.3 | Barley | endoplasmic reticulum, extracellular | 8.18 | 30.59 |
| HORVU2Hr1G089940.3 | Barley | plasma membrane | 25.79 | 28.28 |
| HORVU6Hr1G014300.1 | Barley | cytosol, golgi, peroxisome | 25.16 | 27.4 |
| HORVU5Hr1G125600.1 | Barley | golgi, peroxisome, plasma membrane | 24.84 | 27.15 |
| HORVU0Hr1G014490.7 | Barley | plastid | 24.84 | 26.6 |
| HORVU6Hr1G058930.20 | Barley | golgi, plasma membrane | 22.96 | 25.26 |
| HORVU0Hr1G011280.5 | Barley | cytosol | 20.75 | 25.19 |
| HORVU5Hr1G084230.1 | Barley | extracellular, golgi, mitochondrion | 24.53 | 25.08 |
| HORVU7Hr1G038940.1 | Barley | golgi | 16.04 | 25.0 |
| HORVU2Hr1G038740.1 | Barley | golgi, mitochondrion, plasma membrane | 25.47 | 23.75 |
| HORVU5Hr1G029550.2 | Barley | plasma membrane | 23.27 | 23.27 |
| HORVU2Hr1G097780.15 | Barley | golgi, mitochondrion, plastid | 19.5 | 23.05 |
| HORVU5Hr1G027240.4 | Barley | plasma membrane | 22.96 | 22.96 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 20.75 | 22.76 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 22.01 | 22.51 |
| HORVU2Hr1G010990.2 | Barley | plasma membrane | 21.7 | 21.7 |
| HORVU2Hr1G089820.6 | Barley | golgi | 17.92 | 19.93 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | EMBL:AK375778 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | UniProt:F2EI01 |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:HORVU3Hr1G031620 | EnsemblPlants:HORVU3Hr1G031620.5 | InterPro:IPR023271 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF186 | SUPFAM:SSF81338 | TMHMM:TMhelix | UniParc:UPI0002008B7F | SEG:seg | : |
Description
Predicted protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:F2EI01]
Coordinates
chrchr3H:-:158035649..158036745
Molecular Weight (calculated)
34069.1 Da
IEP (calculated)
12.102
GRAVY (calculated)
0.287
Length
318 amino acids
Sequence
(BLAST)
(BLAST)
001: SFHQTRHNSG RSLGVRVIIS PRQISEATEA RRRRTHGELC SRAPPRGHRG RLRPRRSRRG RAHLPLRLLR RRLRHGHRYV RSTVMVGNGS MHACVKRVWN
101: YMYMWYVYAG RLAGGADTIM GLTAVALAHA MVVAVMVSAG LHVSGGHINP AVTLSLAAGG HITLFRSALY VLAQLLGSSL ACLLLAFLAG SAATMPVHAL
201: SAGVSAPQGV LWEAVLTFSL TFTVYATVVD PRRSVGNLGP LLVGLVVGAN VLAGGPFSGA CMNPARSFGP ALVSGIWACQ WVYWVGPMIG GLLAGLVYDG
301: LFMVRPGHQQ LPSEGTAF
101: YMYMWYVYAG RLAGGADTIM GLTAVALAHA MVVAVMVSAG LHVSGGHINP AVTLSLAAGG HITLFRSALY VLAQLLGSSL ACLLLAFLAG SAATMPVHAL
201: SAGVSAPQGV LWEAVLTFSL TFTVYATVVD PRRSVGNLGP LLVGLVVGAN VLAGGPFSGA CMNPARSFGP ALVSGIWACQ WVYWVGPMIG GLLAGLVYDG
301: LFMVRPGHQQ LPSEGTAF
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.