Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 4
- plasma membrane 2
- extracellular 2
- endoplasmic reticulum 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 | |
| PGSC0003DMT400084737 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G25810.1 | PGSC0003DMT400084737 | AT1G27300.1 | 21798944 |
| AT2G25810.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT2G25810.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 98.38 | 98.38 |
| Bra034271.1-P | Field mustard | cytosol, plasma membrane, vacuole | 75.71 | 75.1 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 75.71 | 75.1 |
| CDX77009 | Canola | cytosol, plasma membrane, vacuole | 75.3 | 74.7 |
| KRH62059 | Soybean | cytosol, plasma membrane, vacuole | 74.09 | 74.39 |
| KRH52727 | Soybean | cytosol | 74.09 | 74.39 |
| CDY35336 | Canola | extracellular | 41.7 | 72.03 |
| GSMUA_Achr10P... | Banana | cytosol, plasma membrane, vacuole | 68.02 | 67.47 |
| EES02191 | Sorghum | cytosol | 60.73 | 59.52 |
| Os01t0232000-00 | Rice | cytosol, endoplasmic reticulum, plasma membrane | 60.32 | 59.36 |
| TraesCS3D01G163400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 59.11 | 59.35 |
| Zm00001d015518_P001 | Maize | endoplasmic reticulum, extracellular | 25.1 | 58.49 |
| Zm00001d019676_P001 | Maize | endoplasmic reticulum, extracellular, plastid | 25.1 | 58.49 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 70.85 | 58.14 |
| TraesCS3B01G182200.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 57.89 | 56.97 |
| TraesCS3A01G434600.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 54.66 | 56.96 |
| Zm00001d037779_P001 | Maize | cytosol, plasma membrane, vacuole | 56.68 | 54.9 |
| TraesCS4D01G344300.1 | Wheat | plasma membrane | 56.28 | 54.51 |
| TraesCS4B01G349500.1 | Wheat | plasma membrane | 56.28 | 54.51 |
| TraesCS3B01G182400.1 | Wheat | plasma membrane | 54.66 | 54.44 |
| TraesCS3A01G155800.1 | Wheat | plasma membrane | 54.66 | 54.44 |
| Zm00001d039713_P001 | Maize | plasma membrane | 54.66 | 54.22 |
| TraesCS5A01G518300.1 | Wheat | golgi, plasma membrane, vacuole | 55.87 | 53.91 |
| PGSC0003DMT400072432 | Potato | cytosol | 53.85 | 53.63 |
| PGSC0003DMT400030994 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 54.25 | 53.6 |
| Zm00001d020747_P001 | Maize | extracellular | 23.08 | 53.27 |
| Zm00001d039293_P001 | Maize | plastid | 61.13 | 52.61 |
| KXG31483 | Sorghum | extracellular, golgi, plasma membrane | 53.85 | 52.57 |
| PGSC0003DMT400018375 | Potato | cytosol | 53.04 | 52.4 |
| Os01t0232100-01 | Rice | cytosol, endoplasmic reticulum, extracellular | 53.04 | 51.17 |
| GSMUA_Achr1P13800_001 | Banana | cytosol | 51.82 | 50.39 |
| PGSC0003DMT400042613 | Potato | cytosol, extracellular, plasma membrane | 50.61 | 50.2 |
| GSMUA_Achr9P06260_001 | Banana | cytosol, golgi, plasma membrane | 51.42 | 49.8 |
| PGSC0003DMT400068047 | Potato | cytosol, extracellular, plastid, vacuole | 49.8 | 49.6 |
| PGSC0003DMT400077927 | Potato | cytosol, plasma membrane, plastid, vacuole | 49.8 | 48.62 |
| PGSC0003DMT400006558 | Potato | endoplasmic reticulum, plasma membrane | 47.77 | 47.39 |
| HORVU4Hr1G085250.2 | Barley | plastid | 55.47 | 45.51 |
| PGSC0003DMT400069330 | Potato | cytosol | 47.37 | 45.17 |
| Os05t0231700-01 | Rice | golgi, mitochondrion, plasma membrane | 57.09 | 44.9 |
| EES17913 | Sorghum | cytosol, plastid | 56.28 | 44.27 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 46.15 | 43.85 |
| Zm00001d010410_P001 | Maize | plasma membrane, plastid | 55.06 | 43.73 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 54.25 | 42.14 |
| PGSC0003DMT400038394 | Potato | plastid | 39.68 | 39.04 |
| PGSC0003DMT400053882 | Potato | extracellular | 27.13 | 34.18 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 34.82 | 32.09 |
| PGSC0003DMT400009240 | Potato | cytosol, extracellular, plasma membrane | 30.36 | 29.88 |
| PGSC0003DMT400053877 | Potato | plasma membrane | 33.6 | 29.75 |
| PGSC0003DMT400027154 | Potato | plasma membrane | 33.2 | 29.18 |
| PGSC0003DMT400020870 | Potato | plasma membrane | 32.39 | 27.87 |
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 31.98 | 27.62 |
| PGSC0003DMT400015824 | Potato | plasma membrane | 31.58 | 27.56 |
| PGSC0003DMT400062174 | Potato | plasma membrane | 31.58 | 27.27 |
| PGSC0003DMT400060322 | Potato | mitochondrion | 30.36 | 27.27 |
| PGSC0003DMT400000151 | Potato | cytosol, peroxisome, plasma membrane | 31.17 | 27.02 |
| PGSC0003DMT400068708 | Potato | plasma membrane | 30.77 | 26.86 |
| PGSC0003DMT400053881 | Potato | plasma membrane | 33.2 | 26.71 |
| PGSC0003DMT400012780 | Potato | cytosol, peroxisome, plasma membrane | 30.36 | 26.04 |
| PGSC0003DMT400053479 | Potato | plasma membrane | 29.96 | 25.87 |
| PGSC0003DMT400014809 | Potato | peroxisome | 29.96 | 25.78 |
| PGSC0003DMT400064008 | Potato | extracellular | 9.72 | 21.43 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006810 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0042807 |
| GO:GO:0055085 | InterPro:IPR023271 | UniProt:M1AKP5 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 |
| EnsemblPlantsGene:PGSC0003DMG400009604 | PGSC:PGSC0003DMG400009604 | EnsemblPlants:PGSC0003DMT400024847 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF186 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI000295D4E1 | : |
Description
Aquaglyceroporin (Tonoplast intrinsic protein (Tipa)) [Source:PGSC_GENE;Acc:PGSC0003DMG400009604]
Coordinates
chr8:-:39670435..39672456
Molecular Weight (calculated)
26044.3 Da
IEP (calculated)
6.216
GRAVY (calculated)
0.834
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKIAIGSSR EAIQPDCIQA LIVEFICTFL FVFAGVGSAM AANKLNGDPL VSLFFVAMAH ALVVAVTISA GFRISGGHLN PAVTLGLCMG GHITVFRSIL
101: YWIDQLLASV AACALLNYLT DGMITPVHTL ANGMSYGQGL IMEVILTFSL LFTVYTTLVD PKKGILEGMG PLLTGLVVGA NIMAGGPFSG ASMNPARSFG
201: PALVSGIWTD HWVYWIGPLI GGGLAGFICE NFFIVRSHVP LPSEETF
101: YWIDQLLASV AACALLNYLT DGMITPVHTL ANGMSYGQGL IMEVILTFSL LFTVYTTLVD PKKGILEGMG PLLTGLVVGA NIMAGGPFSG ASMNPARSFG
201: PALVSGIWTD HWVYWIGPLI GGGLAGFICE NFFIVRSHVP LPSEETF
001: MKKIELGHHS EAAKPDCIKA LIVEFITTFL FVFAGVGSAM ATDSLVGNTL VGLFAVAVAH AFVVAVMISA GHISGGHLNP AVTLGLLLGG HISVFRAFLY
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
101: WIDQLLASSA ACFLLSYLTG GMGTPVHTLA SGVSYTQGII WEIILTFSLL FTVYATIVDP KKGSLDGFGP LLTGFVVGAN ILAGGAFSGA SMNPARSFGP
201: ALVSGNWTDH WVYWVGPLIG GGLAGFIYEN VLIDRPHVPV ADDEQPLLN
Arabidopsis Description
TIP4-1Aquaporin TIP4-1 [Source:UniProtKB/Swiss-Prot;Acc:O82316]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.