Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g094690.2.1 | Tomato | nucleus | 98.95 | 98.95 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 89.12 | 88.81 |
| AT4G23400.1 | Thale cress | plasma membrane | 88.77 | 88.15 |
| Bra032644.1-P | Field mustard | plasma membrane | 88.42 | 88.11 |
| CDY38017 | Canola | plasma membrane | 87.72 | 87.41 |
| AT3G61430.1 | Thale cress | plasma membrane | 87.72 | 87.41 |
| CDX89115 | Canola | plasma membrane | 68.77 | 87.11 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 87.72 | 87.11 |
| CDY07221 | Canola | cytosol, peroxisome, plasma membrane | 87.37 | 87.06 |
| CDY51161 | Canola | cytosol, peroxisome, plasma membrane | 87.37 | 87.06 |
| CDY66912 | Canola | extracellular | 62.81 | 86.89 |
| CDY10936 | Canola | plasma membrane | 87.37 | 86.76 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 87.02 | 86.71 |
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 87.02 | 86.71 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 87.02 | 86.71 |
| CDY48920 | Canola | plasma membrane | 87.02 | 86.71 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 87.02 | 86.71 |
| CDX90046 | Canola | cytosol, peroxisome, plasma membrane | 87.02 | 86.71 |
| Bra033248.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 87.02 | 86.71 |
| Bra019307.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 87.02 | 86.41 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 86.67 | 86.36 |
| CDX71738 | Canola | plasma membrane | 86.67 | 86.36 |
| Bra007603.1-P | Field mustard | plasma membrane | 86.67 | 86.36 |
| CDX74334 | Canola | cytosol, peroxisome, plasma membrane | 87.02 | 86.11 |
| Bra000974.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 87.02 | 86.11 |
| CDX94185 | Canola | plasma membrane | 86.67 | 86.06 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 86.32 | 86.01 |
| PGSC0003DMT400053479 | Potato | plasma membrane | 86.32 | 86.01 |
| CDX91911 | Canola | cytosol, peroxisome, plasma membrane | 86.67 | 85.76 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 85.96 | 85.66 |
| KRH27918 | Soybean | plasma membrane | 85.96 | 85.66 |
| KRH77555 | Soybean | plasma membrane | 85.96 | 85.66 |
| Bra004950.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 85.61 | 85.31 |
| Bra014437.1-P | Field mustard | plasma membrane | 85.26 | 84.97 |
| PGSC0003DMT400012780 | Potato | cytosol, peroxisome, plasma membrane | 85.26 | 84.38 |
| KRH66037 | Soybean | golgi, peroxisome, plasma membrane | 83.86 | 84.15 |
| PGSC0003DMT400014809 | Potato | peroxisome | 84.56 | 83.97 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 84.21 | 83.62 |
| KRH59918 | Soybean | peroxisome | 83.86 | 83.28 |
| KRH41192 | Soybean | endoplasmic reticulum | 84.21 | 83.05 |
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 83.16 | 82.87 |
| KRH00178 | Soybean | golgi, peroxisome, plasma membrane | 82.46 | 81.88 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 80.7 | 80.42 |
| CDY15165 | Canola | plastid | 88.07 | 77.47 |
| CDY66913 | Canola | cytosol, mitochondrion, nucleus | 12.28 | 76.09 |
| AT2G45960.3 | Thale cress | golgi, peroxisome, plasma membrane | 79.65 | 75.42 |
| PGSC0003DMT400053882 | Potato | extracellular | 50.53 | 73.47 |
| PGSC0003DMT400027154 | Potato | plasma membrane | 68.77 | 69.75 |
| PGSC0003DMT400009240 | Potato | cytosol, extracellular, plasma membrane | 61.05 | 69.32 |
| PGSC0003DMT400062174 | Potato | plasma membrane | 68.07 | 67.83 |
| PGSC0003DMT400053877 | Potato | plasma membrane | 66.32 | 67.74 |
| PGSC0003DMT400020870 | Potato | plasma membrane | 67.37 | 66.9 |
| TraesCS2A01G407700.2 | Wheat | golgi, peroxisome, plasma membrane | 67.37 | 66.44 |
| PGSC0003DMT400015824 | Potato | plasma membrane | 65.26 | 65.72 |
| PGSC0003DMT400068708 | Potato | plasma membrane | 64.91 | 65.37 |
| KRH75838 | Soybean | golgi, peroxisome, plasma membrane | 82.11 | 64.46 |
| PGSC0003DMT400060322 | Potato | mitochondrion | 61.05 | 63.27 |
| PGSC0003DMT400053881 | Potato | plasma membrane | 65.96 | 61.24 |
| PGSC0003DMT400064008 | Potato | extracellular | 23.86 | 60.71 |
| PGSC0003DMT400042613 | Potato | cytosol, extracellular, plasma membrane | 31.93 | 36.55 |
| PGSC0003DMT400068047 | Potato | cytosol, extracellular, plastid, vacuole | 30.53 | 35.08 |
| PGSC0003DMT400030994 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 30.53 | 34.8 |
| PGSC0003DMT400072432 | Potato | cytosol | 30.18 | 34.68 |
| PGSC0003DMT400077927 | Potato | cytosol, plasma membrane, plastid, vacuole | 30.53 | 34.39 |
| PGSC0003DMT400069330 | Potato | cytosol | 30.53 | 33.59 |
| PGSC0003DMT400018375 | Potato | cytosol | 29.12 | 33.2 |
| PGSC0003DMT400006558 | Potato | endoplasmic reticulum, plasma membrane | 28.77 | 32.93 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 28.77 | 31.54 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 27.02 | 31.17 |
| PGSC0003DMT400038394 | Potato | plastid | 26.32 | 29.88 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:102598096 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR023271 | UniProt:M0ZG68 | InterPro:MIP | InterPro:MIP_CS |
| PFAM:PF00230 | EnsemblPlantsGene:PGSC0003DMG400000045 | PGSC:PGSC0003DMG400000045 | EnsemblPlants:PGSC0003DMT400000151 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF169 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0002958FEE |
| RefSeq:XP_006339582.1 | : | : | : | : | : |
Description
Water channel protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000045]
Coordinates
chr1:+:72262979..72265501
Molecular Weight (calculated)
30575.1 Da
IEP (calculated)
8.838
GRAVY (calculated)
0.356
Length
285 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEEDVKV GANKYSERQP LGTSAQSKDY KETPPAPFFE AGELHSWSFW RAGIAEFMAT FLFLYITVLT VMGYSRANNK CSTVGVQGIA WAFGGMIFAL
101: VYCTAGISGG HINPAVTFGL FLARKLSLTR AVFYIVMQCL GAICGAGVVK GFQPSLFETK GGGANVVAHG YTKGDGLGAE IIGTFVLVYT VFSATDAKRN
201: ARDSHVPILA PLPIGFAVFL VHLATIPITG TGINPARSLG AAIVYNKEHA WDDHWIFWVG PFIGAALAAL YHQVIIRAIP FKSGN
101: VYCTAGISGG HINPAVTFGL FLARKLSLTR AVFYIVMQCL GAICGAGVVK GFQPSLFETK GGGANVVAHG YTKGDGLGAE IIGTFVLVYT VFSATDAKRN
201: ARDSHVPILA PLPIGFAVFL VHLATIPITG TGINPARSLG AAIVYNKEHA WDDHWIFWVG PFIGAALAAL YHQVIIRAIP FKSGN
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.