Factsheet for PGSC0003DMT400062174

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400000151
PGSC0003DMT400012780
PGSC0003DMT400014809
PGSC0003DMT400032134
PGSC0003DMT400053479

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39010.1	PGSC0003DMT400000151	AT4G23400.1	21798944
AT2G39010.1	PGSC0003DMT400012780	AT4G23400.1	21798944
AT2G39010.1	PGSC0003DMT400014809	AT4G23400.1	21798944
AT2G39010.1	PGSC0003DMT400032134	AT4G23400.1	21798944
AT2G39010.1	PGSC0003DMT400053479	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g011350.2.1	Tomato	nucleus	94.41	96.43
PGSC0003DMT400020870	Potato	plasma membrane	91.96	91.64
PGSC0003DMT400053882	Potato	extracellular	56.99	83.16
PGSC0003DMT400053877	Potato	plasma membrane	79.37	81.36
PGSC0003DMT400027154	Potato	plasma membrane	79.02	80.43
AT2G39010.1	Thale cress	plasma membrane	78.32	77.51
PGSC0003DMT400068708	Potato	plasma membrane	76.57	77.39
PGSC0003DMT400015824	Potato	plasma membrane	75.17	75.97
CDY14415	Canola	cytosol, peroxisome, plasma membrane	76.22	75.69
Bra000111.1-P	Field mustard	plasma membrane	75.52	75.0
CDY07681	Canola	plasma membrane	75.52	75.0
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	64.69	73.71
PGSC0003DMT400053881	Potato	plasma membrane	79.02	73.62
PGSC0003DMT400053479	Potato	plasma membrane	68.88	68.88
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	67.83	68.07
PGSC0003DMT400014809	Potato	peroxisome	68.18	67.94
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	67.48	67.01
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	66.78	66.78
PGSC0003DMT400060322	Potato	mitochondrion	62.94	65.45
PGSC0003DMT400064008	Potato	extracellular	22.03	56.25
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	33.92	38.96
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	32.52	37.2
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	32.17	37.1
PGSC0003DMT400072432	Potato	cytosol	30.77	35.48
PGSC0003DMT400018375	Potato	cytosol	30.42	34.8
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	30.07	34.54
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	30.42	34.39
PGSC0003DMT400069330	Potato	cytosol	29.37	32.43
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	27.27	31.58
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	27.27	30.0
PGSC0003DMT400038394	Potato	plastid	24.48	27.89

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102596028	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1C8M4	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400024197	PGSC:PGSC0003DMG400024197	EnsemblPlants:PGSC0003DMT400062174	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF264	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B37CF9
RefSeq:XP_006357563.1	SEG:seg	:	:	:	:

Description

Major intrinsic protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024197]

Coordinates

chr6:+:10412615..10414546

Molecular Weight (calculated)

30664.3 Da

IEP (calculated)

7.175

GRAVY (calculated)

0.565

Length

286 amino acids

Sequence
(BLAST)

001: MTKEVESVTE RGEFSAKDYT DPPPAPLVDF EELTQWSFYR AIIAEFIATL LFLYITILTV IGYQHQADVD AGGDVCGGVG ILGIAWAFGG MIFILVYCTA
101: GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSA YYNRYGGGVN VMAAGHNKGV GLGAEIIGTF VLVYTVFSAT DPKRNARDSH
201: VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NGDKAWDEHW IFWVGPFIGA FIAAFYHQFV LRAGAIKALG SFRSNA

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.