Factsheet for PGSC0003DMT400060322

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	81.82	77.85
PGSC0003DMT400053882	Potato	extracellular	46.18	64.8
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	58.91	64.54
PGSC0003DMT400020870	Potato	plasma membrane	66.91	64.11
PGSC0003DMT400062174	Potato	plasma membrane	65.45	62.94
PGSC0003DMT400027154	Potato	plasma membrane	64.0	62.63
PGSC0003DMT400053877	Potato	plasma membrane	63.27	62.37
PGSC0003DMT400068708	Potato	plasma membrane	62.91	61.13
PGSC0003DMT400000151	Potato	cytosol, peroxisome, plasma membrane	63.27	61.05
PGSC0003DMT400053479	Potato	plasma membrane	62.91	60.49
PGSC0003DMT400015824	Potato	plasma membrane	62.18	60.42
PGSC0003DMT400032134	Potato	cytosol, peroxisome, plasma membrane	62.55	60.14
PGSC0003DMT400012780	Potato	cytosol, peroxisome, plasma membrane	62.55	59.72
PGSC0003DMT400014809	Potato	peroxisome	61.82	59.23
PGSC0003DMT400053881	Potato	plasma membrane	62.91	56.35
PGSC0003DMT400064008	Potato	extracellular	22.91	56.25
PGSC0003DMT400018375	Potato	cytosol	29.82	32.8
PGSC0003DMT400077927	Potato	cytosol, plasma membrane, plastid, vacuole	29.82	32.41
PGSC0003DMT400072432	Potato	cytosol	29.09	32.26
PGSC0003DMT400068047	Potato	cytosol, extracellular, plastid, vacuole	28.73	31.85
PGSC0003DMT400042613	Potato	cytosol, extracellular, plasma membrane	28.73	31.73
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	28.0	30.8
PGSC0003DMT400024847	Potato	extracellular, plasma membrane, vacuole	27.27	30.36
PGSC0003DMT400069330	Potato	cytosol	28.0	29.73
PGSC0003DMT400006558	Potato	endoplasmic reticulum, plasma membrane	26.18	28.92
PGSC0003DMT400038394	Potato	plastid	25.82	28.29
PGSC0003DMT400039507	Potato	cytosol, golgi, plasma membrane	24.36	25.77

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:102589206	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020
GO:GO:0016021	GO:GO:0055085	InterPro:IPR023271	UniProt:M1C5M0	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	EnsemblPlantsGene:PGSC0003DMG400023466	PGSC:PGSC0003DMG400023466	EnsemblPlants:PGSC0003DMT400060322	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF167	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00029497AA
RefSeq:XP_006345806.1	:	:	:	:	:

Description

Plasma membrane intrinsic protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023466]

Coordinates

chr5:+:51511521..51515352

Molecular Weight (calculated)

29330.3 Da

IEP (calculated)

9.651

GRAVY (calculated)

0.522

Length

275 amino acids

Sequence
(BLAST)

001: MRNEVSSALP EKSSSPAKDY HEPPPAPFIG AAELKKWALY RALIAEFVAT LLLLYIGMLT IMGNVSERAK NDDPCSGVGL LGIAWALGGM VFILVYCTAG
101: ISGGHINPAV TFGLFLSRKI SLIRGLLYII VQYLGAICGA ALVKAIYKSK YEHYGGGVNL IAPGYTKGVA WSAEMIGTFV LVYTVLSATD SKRNARDSHV
201: PVLAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAVIYN KEIAWKDLGI FSGGPFTGAI IAAIYQLILR GCKWR

Best Arabidopsis Sequence Match ( AT2G37170.2 )
(BLAST)

001: MRALTIAIVS LYKQLSFVSS VFTNTTYPQY KTQLSYITKK VIEMAKDVEG PEGFQTRDYE DPPPTPFFDA DELTKWSLYR AVIAEFVATL LFLYITVLTV
101: IGYKIQSDTK AGGVDCGGVG ILGIAWAFGG MIFILVYCTA GISGGHINPA VTFGLFLARK VSLIRAVLYM VAQCLGAICG VGFVKAFQSS YYDRYGGGAN
201: SLADGYNTGT GLAAEIIGTF VLVYTVFSAT DPKRNARDSH VPVLAPLPIG FAVFMVHLAT IPITGTGINP ARSFGAAVIY NKSKPWDDHW IFWVGPFIGA
301: AIAAFYHQFV LRASGSKSLG SFRSAANV

Arabidopsis Description

PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.