Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400006495 | |
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17340.1 | PGSC0003DMT400006495 | AT3G16310.1 | 21798944 |
| AT4G17340.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT4G17340.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 98.4 | 98.4 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 84.8 | 85.14 |
| AT4G17340.1 | Thale cress | golgi, plasma membrane, vacuole | 84.8 | 84.8 |
| CDY65121 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 84.8 | 84.8 |
| Bra026245.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 84.8 | 84.8 |
| CDY64499 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 84.0 | 84.0 |
| TraesCS6D01G232100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 83.6 | 83.94 |
| TraesCS6A01G250300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 83.6 | 83.94 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 83.6 | 83.94 |
| HORVU6Hr1G062980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 82.8 | 83.13 |
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 82.8 | 83.13 |
| Os02t0658100-01 | Rice | vacuole | 68.4 | 83.01 |
| CDY51678 | Canola | plasma membrane, vacuole | 82.8 | 82.8 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 82.4 | 82.73 |
| Zm00001d002738_P001 | Maize | plasma membrane | 82.0 | 82.66 |
| VIT_00s0229g00130.t01 | Wine grape | endoplasmic reticulum, plasma membrane, vacuole | 82.4 | 82.4 |
| Bra022131.1-P | Field mustard | extracellular | 67.2 | 82.35 |
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 40.8 | 82.26 |
| Zm00001d026177_P001 | Maize | extracellular | 81.6 | 82.26 |
| AT5G47450.1 | Thale cress | golgi, plasma membrane | 82.0 | 82.0 |
| EES12617 | Sorghum | plasma membrane | 81.6 | 81.93 |
| CDX77768 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 82.0 | 81.67 |
| CDY59296 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 82.0 | 81.67 |
| Zm00001d051362_P001 | Maize | plasma membrane | 81.2 | 81.53 |
| TraesCS2B01G433200.1 | Wheat | plasma membrane | 80.8 | 81.45 |
| Bra024943.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 81.6 | 81.27 |
| KXG31086 | Sorghum | golgi, plasma membrane, vacuole | 80.8 | 81.12 |
| TraesCS2D01G411400.1 | Wheat | plasma membrane | 80.4 | 81.05 |
| CDY28932 | Canola | endoplasmic reticulum, extracellular, vacuole | 68.0 | 80.95 |
| Zm00001d017485_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 80.8 | 80.8 |
| TraesCS2A01G414100.1 | Wheat | plasma membrane | 80.0 | 80.65 |
| PGSC0003DMT400042613 | Potato | cytosol, extracellular, plasma membrane | 79.2 | 79.52 |
| KRH28112 | Soybean | mitochondrion | 77.2 | 77.51 |
| KRH77347 | Soybean | mitochondrion | 76.8 | 77.11 |
| PGSC0003DMT400068047 | Potato | cytosol, extracellular, plastid, vacuole | 76.4 | 77.02 |
| Os04t0550900-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 42.0 | 73.94 |
| PGSC0003DMT400006558 | Potato | endoplasmic reticulum, plasma membrane | 72.0 | 72.29 |
| PGSC0003DMT400072432 | Potato | cytosol | 61.6 | 62.1 |
| PGSC0003DMT400018375 | Potato | cytosol | 59.2 | 59.2 |
| PGSC0003DMT400077927 | Potato | cytosol, plasma membrane, plastid, vacuole | 57.2 | 56.52 |
| AT1G52180.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 27.6 | 55.65 |
| PGSC0003DMT400024847 | Potato | extracellular, plasma membrane, vacuole | 53.6 | 54.25 |
| PGSC0003DMT400069330 | Potato | cytosol | 52.8 | 50.97 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 52.4 | 50.38 |
| PGSC0003DMT400038394 | Potato | plastid | 49.6 | 49.4 |
| PGSC0003DMT400053882 | Potato | extracellular | 30.4 | 38.78 |
| PGSC0003DMT400009240 | Potato | cytosol, extracellular, plasma membrane | 35.6 | 35.46 |
| PGSC0003DMT400053877 | Potato | plasma membrane | 38.8 | 34.77 |
| PGSC0003DMT400027154 | Potato | plasma membrane | 38.4 | 34.16 |
| PGSC0003DMT400020870 | Potato | plasma membrane | 37.6 | 32.75 |
| PGSC0003DMT400062174 | Potato | plasma membrane | 37.2 | 32.52 |
| PGSC0003DMT400015824 | Potato | plasma membrane | 36.4 | 32.16 |
| PGSC0003DMT400068708 | Potato | plasma membrane | 35.6 | 31.45 |
| PGSC0003DMT400053881 | Potato | plasma membrane | 38.4 | 31.27 |
| PGSC0003DMT400000151 | Potato | cytosol, peroxisome, plasma membrane | 34.8 | 30.53 |
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 34.8 | 30.42 |
| PGSC0003DMT400053479 | Potato | plasma membrane | 34.0 | 29.72 |
| PGSC0003DMT400014809 | Potato | peroxisome | 34.0 | 29.62 |
| PGSC0003DMT400012780 | Potato | cytosol, peroxisome, plasma membrane | 34.0 | 29.51 |
| PGSC0003DMT400060322 | Potato | mitochondrion | 30.8 | 28.0 |
| PGSC0003DMT400064008 | Potato | extracellular | 12.4 | 27.68 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | ProteinID:AAB67881 | ProteinID:AAB67881.1 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | InterPro:IPR023271 | UniProt:M1AV21 | InterPro:MIP |
| InterPro:MIP_CS | PFAM:PF00230 | EnsemblPlantsGene:PGSC0003DMG400011875 | PGSC:PGSC0003DMG400011875 | EnsemblPlants:PGSC0003DMT400030994 | PRINTS:PR00783 |
| ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF257 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| EMBL:U65700 | UniParc:UPI0002951208 | : | : | : | : |
Description
Membrane channel protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011875]
Coordinates
chr6:+:43939852..43942886
Molecular Weight (calculated)
25152.8 Da
IEP (calculated)
5.481
GRAVY (calculated)
0.898
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKIAFGSIG DSLSVGSLKA YLAEFIATLL FVFAGVGSAI AYNKLTSDAA LDPAGLVAIA VAHAFALFVG VSMAANISGG HLNPAVTLGL AVGGNITILT
101: GLFYWVAQLL GSTVACLLLK YVTNGLAVPT HGVAAGMSGA EGVVMEIVIT FALVYTVYAT AADPKKGSLG TIAPMAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVAGD FSQNWIYWVG PLIGGGLAGF IYGDVFIGSH TPLPTSEDYA
101: GLFYWVAQLL GSTVACLLLK YVTNGLAVPT HGVAAGMSGA EGVVMEIVIT FALVYTVYAT AADPKKGSLG TIAPMAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVAGD FSQNWIYWVG PLIGGGLAGF IYGDVFIGSH TPLPTSEDYA
001: MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
Arabidopsis Description
TIP2-3Aquaporin TIP2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL2]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.