Factsheet for Zm00001d051362_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 1
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 4
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

plastid: 20089766
extracellular: 20408568
plastid: 22065420
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 20089766 doi

G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d008871_P001
Zm00001d010783_P001
Zm00001d017390_P001
Zm00001d025939_P003
Zm00001d036342_P001
Zm00001d038803_P001
Zm00001d049553_P001
Zm00001d051288_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17340.1	Zm00001d008871_P001	AT3G16310.1	21798944
AT4G17340.1	Zm00001d010783_P001	AT3G16310.1	21798944
AT4G17340.1	Zm00001d038803_P001	AT3G16310.1	21798944
AT4G17340.1	Zm00001d017390_P001	AT3G60600.1	21798944
AT4G17340.1	Zm00001d025939_P003	AT3G60600.1	21798944
AT4G17340.1	Zm00001d036342_P001	AT3G60600.1	21798944
AT4G17340.1	Zm00001d049553_P001	AT3G60600.1	21798944
AT4G17340.1	Zm00001d051288_P001	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os02t0658100-01	Rice	vacuole	78.31	94.66
KXG31086	Sorghum	golgi, plasma membrane, vacuole	93.98	93.98
Zm00001d017485_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	93.98	93.6
HORVU6Hr1G062980.1	Barley	endoplasmic reticulum, plasma membrane, vacuole	89.96	89.96
HORVU0Hr1G032130.2	Barley	endoplasmic reticulum, plasma membrane, vacuole	89.96	89.96
Zm00001d002738_P001	Maize	plasma membrane	89.56	89.92
TraesCS6A01G250300.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	89.56	89.56
TraesCS6D01G232100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	89.56	89.56
TraesCS6B01G275100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	88.75	88.75
Zm00001d026177_P001	Maize	extracellular	87.95	88.31
GSMUA_Achr11P...	Banana	extracellular, plasma membrane	87.15	87.15
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plasma membrane	85.94	85.94
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	81.53	81.2
PGSC0003DMT400030994	Potato	endoplasmic reticulum, plasma membrane, vacuole	81.53	81.2
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	79.52	79.2
VIT_00s2783g00010.t01	Wine grape	extracellular	39.36	79.03
CDY65121	Canola	endoplasmic reticulum, plasma membrane, vacuole	77.11	76.8
Bra026245.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	77.11	76.8
AT5G47450.1	Thale cress	golgi, plasma membrane	77.11	76.8
Bra022131.1-P	Field mustard	extracellular	62.65	76.47
AT4G17340.1	Thale cress	golgi, plasma membrane, vacuole	76.71	76.4
CDY64499	Canola	endoplasmic reticulum, plasma membrane, vacuole	76.71	76.4
CDY51678	Canola	plasma membrane, vacuole	76.31	76.0
CDY28932	Canola	endoplasmic reticulum, extracellular, vacuole	63.86	75.71
KRH28112	Soybean	mitochondrion	75.1	75.1
KRH77347	Soybean	mitochondrion	75.1	75.1
CDY59296	Canola	endoplasmic reticulum, plasma membrane, vacuole	75.5	74.9
CDX77768	Canola	endoplasmic reticulum, plasma membrane, vacuole	75.5	74.9
Bra024943.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	75.1	74.5
Zm00001d027652_P001	Maize	plasma membrane	61.45	61.2
Zm00001d011778_P001	Maize	plasma membrane	61.04	59.84
AT1G52180.1	Thale cress	endoplasmic reticulum, extracellular, vacuole	26.91	54.03
Zm00001d013956_P003	Maize	plasma membrane	50.6	48.09
Zm00001d032610_P003	Maize	mitochondrion, plastid	50.2	46.99
Zm00001d037779_P001	Maize	cytosol, plasma membrane, vacuole	47.79	46.67
Zm00001d015518_P001	Maize	endoplasmic reticulum, extracellular	19.68	46.23
Zm00001d020747_P001	Maize	extracellular	19.68	45.79
Zm00001d039713_P001	Maize	plasma membrane	45.38	45.38
Zm00001d019676_P001	Maize	endoplasmic reticulum, extracellular, plastid	19.28	45.28
Zm00001d039293_P001	Maize	plastid	51.0	44.25
Zm00001d002952_P001	Maize	plasma membrane	46.59	43.77
Zm00001d026178_P002	Maize	plastid	41.37	38.58
Zm00001d010410_P001	Maize	plasma membrane, plastid	46.18	36.98
Zm00001d019563_P006	Maize	plasma membrane	37.35	32.07
Zm00001d005421_P001	Maize	plasma membrane	37.35	31.85
Zm00001d005410_P001	Maize	plasma membrane	35.34	30.77
Zm00001d014285_P001	Maize	plasma membrane	34.94	30.74
Zm00001d017288_P001	Maize	plasma membrane	35.34	30.56
Zm00001d019565_P001	Maize	plasma membrane	35.34	30.56
Zm00001d051174_P002	Maize	plasma membrane	35.34	30.45
Zm00001d003006_P001	Maize	plasma membrane	34.14	29.82
Zm00001d022608_P001	Maize	plasma membrane	33.33	28.82
Zm00001d048520_P014	Maize	mitochondrion	30.92	28.73
Zm00001d002690_P001	Maize	plasma membrane	32.93	28.47
Zm00001d051872_P001	Maize	plasma membrane	31.73	27.43
Zm00001d051403_P001	Maize	plasma membrane	32.13	27.4
Zm00001d017526_P001	Maize	plasma membrane	31.73	27.34

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.3	EntrezGene:541894	UniProt:A0A1Q0YPG4	EMBL:AF326501	ProteinID:AQK54095.1
InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0005774	GO:GO:0006810	GO:GO:0008150
GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0032586	GO:GO:0055085	InterPro:IPR023271
InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139
PANTHER:PTHR19139:SF257	UniProt:Q9ATL9	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI00000A6DC4
EnsemblPlantsGene:Zm00001d051362	EnsemblPlants:Zm00001d051362_P001	EnsemblPlants:Zm00001d051362_T001	SEG:seg	:	:

Description

tonoplast intrinsic protein2 tonoplast intrinsic protein2

Coordinates

chr4:-:155984860..155986408

Molecular Weight (calculated)

24871.2 Da

IEP (calculated)

5.430

GRAVY (calculated)

0.948

Length

249 amino acids

Sequence
(BLAST)

001: MVKLAFGSVG DSFSATSIKA YVAEFIATLL FVFAGVGSAI AYGQLTNGGA LDPAGLVAIA IAHALALFVG VSVAANISGG HLNPAVTFGL AVGGHITILT
101: GVFYWVAQLL GATVACLLLG FVTHGKAIPT HAVAGISELE GVVFEVVITF ALVYTVYATA ADPKKGSLGT IAPIAIGFIV GANILAAGPF SGGSMNPARS
201: FGPAVAAGDF AGNWVYWVGP LVGGGLAGLV YGDVFIGGSY QQVADQDYA

Best Arabidopsis Sequence Match ( AT5G47450.1 )
(BLAST)

001: MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV

Arabidopsis Description

TIP2-3Aquaporin TIP2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL2]
SUBAcon: [plasma membrane,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.