Factsheet for Zm00001d002690_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, peroxisome, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

extracellular: 20408568
plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005421_P001
Zm00001d010435_P001
Zm00001d019563_P006
Zm00001d021242_P001
Zm00001d044473_P001
Zm00001d052497_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	Zm00001d005421_P001	AT2G37180.1	21798944
AT1G01620.1	Zm00001d019563_P006	AT2G37180.1	21798944
AT1G01620.1	Zm00001d005421_P001	AT3G54820.1	21798944
AT1G01620.1	Zm00001d019563_P006	AT3G54820.1	21798944
AT4G00430.1	Zm00001d005421_P001	AT2G37180.1	21798944
AT4G00430.1	Zm00001d019563_P006	AT2G37180.1	21798944
AT4G00430.1	Zm00001d005421_P001	AT3G54820.1	21798944
AT4G00430.1	Zm00001d019563_P006	AT3G54820.1	21798944
AT4G00430.1	Zm00001d010435_P001	AT4G24090.1	21798944
AT4G00430.1	Zm00001d021242_P001	AT4G24090.1	21798944
AT4G00430.1	Zm00001d044473_P001	AT4G24090.1	21798944
AT4G00430.1	Zm00001d052497_P001	AT4G24090.1	21798944
AT4G23400.1	Zm00001d005421_P001	AT2G37180.1	21798944
AT4G23400.1	Zm00001d019563_P006	AT2G37180.1	21798944
AT4G23400.1	Zm00001d005421_P001	AT3G54820.1	21798944
AT4G23400.1	Zm00001d019563_P006	AT3G54820.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES11257	Sorghum	cytosol, peroxisome, plasma membrane	98.26	98.26
Zm00001d017526_P001	Maize	plasma membrane	97.57	97.23
Zm00001d051403_P001	Maize	plasma membrane	97.22	95.89
Os02t0666200-01	Rice	plasma membrane	95.49	95.16
TraesCS6B01G279200.1	Wheat	plastid	94.1	93.45
TraesCS6A01G245100.1	Wheat	golgi, peroxisome, plasma membrane	93.4	92.76
TraesCS6D01G227500.1	Wheat	golgi	93.4	92.76
HORVU6Hr1G064140.1	Barley	golgi, peroxisome, plasma membrane	93.06	92.41
Zm00001d051872_P001	Maize	plasma membrane	91.32	91.32
AT4G23400.1	Thale cress	plasma membrane	86.81	87.11
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	86.46	87.06
Solyc03g096290.2.1	Tomato	nucleus	86.46	87.06
CDY66913	Canola	cytosol, mitochondrion, nucleus	13.89	86.96
CDX83385	Canola	cytosol, peroxisome, plasma membrane	86.11	86.71
CDX89115	Canola	plasma membrane	67.71	86.67
Solyc01g094690.2.1	Tomato	nucleus	85.76	86.67
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	86.11	86.41
CDX74777	Canola	cytosol, peroxisome, plasma membrane	85.76	86.36
CDX95670	Canola	cytosol, peroxisome, plasma membrane	85.76	86.36
CDY10936	Canola	plasma membrane	85.76	86.06
Solyc08g008050.2.1	Tomato	peroxisome	85.76	86.06
CDY18886	Canola	cytosol, peroxisome, plasma membrane	85.42	86.01
CDY27346	Canola	cytosol, peroxisome, plasma membrane	85.42	86.01
CDY37078	Canola	cytosol, peroxisome, plasma membrane	85.42	86.01
CDY38017	Canola	plasma membrane	85.42	86.01
AT3G61430.1	Thale cress	plasma membrane	85.42	86.01
CDY66912	Canola	extracellular	61.46	85.92
Solyc08g081190.2.1	Tomato	plastid	85.07	85.66
CDY51161	Canola	cytosol, peroxisome, plasma membrane	85.07	85.66
CDX71738	Canola	plasma membrane	85.07	85.66
CDX90046	Canola	cytosol, peroxisome, plasma membrane	85.07	85.66
CDX74334	Canola	cytosol, peroxisome, plasma membrane	85.42	85.42
CDX94185	Canola	plasma membrane	85.07	85.37
CDY48920	Canola	plasma membrane	84.72	85.31
CDY07221	Canola	cytosol, peroxisome, plasma membrane	84.72	85.31
CDX91911	Canola	cytosol, peroxisome, plasma membrane	85.07	85.07
Solyc12g056220.1.1	Tomato	plastid	84.72	84.72
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	75.35	77.5
CDY15165	Canola	plastid	85.42	75.93
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	78.47	75.08
KRG97766	Soybean	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	33.68	72.39
Zm00001d005410_P001	Maize	plasma membrane	66.32	66.78
Zm00001d003006_P001	Maize	plasma membrane	65.97	66.67
Zm00001d019565_P001	Maize	plasma membrane	66.32	66.32
Zm00001d017288_P001	Maize	plasma membrane	65.62	65.62
Zm00001d051174_P002	Maize	plasma membrane	65.62	65.4
Zm00001d019563_P006	Maize	plasma membrane	65.62	65.17
Zm00001d014285_P001	Maize	plasma membrane	63.19	64.31
Zm00001d005421_P001	Maize	plasma membrane	64.24	63.36
Zm00001d022608_P001	Maize	plasma membrane	60.76	60.76
PGSC0003DMT400064008	Potato	extracellular	23.61	60.71
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	26.74	54.61
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	21.18	51.26
Zm00001d002738_P001	Maize	plasma membrane	29.51	34.27
Zm00001d026177_P001	Maize	extracellular	28.82	33.47
Zm00001d051362_P001	Maize	plasma membrane	28.47	32.93
Zm00001d017485_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	28.12	32.4
Zm00001d027652_P001	Maize	plasma membrane	27.43	31.6
Zm00001d011778_P001	Maize	plasma membrane	27.78	31.5
Zm00001d013956_P003	Maize	plasma membrane	28.47	31.3
Zm00001d032610_P003	Maize	mitochondrion, plastid	28.82	31.2
Zm00001d002952_P001	Maize	plasma membrane	27.43	29.81
Zm00001d019676_P001	Maize	endoplasmic reticulum, extracellular, plastid	10.76	29.25
Zm00001d015518_P001	Maize	endoplasmic reticulum, extracellular	10.76	29.25
Zm00001d039713_P001	Maize	plasma membrane	24.31	28.11
Zm00001d026178_P002	Maize	plastid	25.35	27.34
Zm00001d020747_P001	Maize	extracellular	10.07	27.1
Zm00001d037779_P001	Maize	cytosol, plasma membrane, vacuole	23.61	26.67
Zm00001d039293_P001	Maize	plastid	26.04	26.13
Zm00001d048520_P014	Maize	mitochondrion	20.83	22.39
Zm00001d010410_P001	Maize	plasma membrane, plastid	22.57	20.9

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EntrezGene:542434	EMBL:AY243800	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
EMBL:BT037663	EMBL:BT039483	GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005886
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0032991	GO:GO:0043234	GO:GO:0051289	GO:GO:0051290	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	ProteinID:ONM15097.1	PFAM:PF00230	PRINTS:PR00783
ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	UniProt:Q84RL8	SUPFAM:SSF81338	TIGRFAMs:TIGR00861
TMHMM:TMhelix	UniParc:UPI000018677A	EnsemblPlantsGene:Zm00001d002690	EnsemblPlants:Zm00001d002690_P001	EnsemblPlants:Zm00001d002690_T001	SEG:seg

Description

plasma membrane intrinsic protein1 plasma membrane intrinsic protein1

Coordinates

chr2:-:19342470..19344477

Molecular Weight (calculated)

30679.4 Da

IEP (calculated)

9.080

GRAVY (calculated)

0.402

Length

288 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANKFSERQP IGTAAQGTDD KDYKEPPPAP LFEPGELKSW SFYRAGIAEF VATFLFLYIS ILTVMGVSKS TSKCATVGIQ GIAWSFGGMI
101: FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRAVFYIIM QCLGAICGAG VVKGFQQGLY MGNGGGANVV APGYTKGDGL GAEIVGTFIL VYTVFSATDA
201: KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAVIYNQ HHAWADHWIF WVGPFIGAAL AAIYHQVIIR AIPFKSRS

Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS

Arabidopsis Description

PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.