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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67611
CDX69112
CDX72515
CDX73446
CDX74983
CDX74984
CDX76314
CDX78265
CDX91340
CDX91341
CDY07519
CDY17511
CDY46758
CDY46759
CDY52648
CDY70391

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G23400.1 CDX74983 AT2G37180.1 21798944
AT4G23400.1 CDX74984 AT2G37180.1 21798944
AT4G23400.1 CDX91340 AT2G37180.1 21798944
AT4G23400.1 CDX91341 AT2G37180.1 21798944
AT4G23400.1 CDY46758 AT2G37180.1 21798944
AT4G23400.1 CDY46759 AT2G37180.1 21798944
AT4G23400.1 CDY70391 AT2G37180.1 21798944
AT4G23400.1 CDX67611 AT3G54820.1 21798944
AT4G23400.1 CDX73446 AT3G54820.1 21798944
AT4G23400.1 CDX78265 AT3G54820.1 21798944
AT4G23400.1 CDY07519 AT3G54820.1 21798944
AT4G23400.1 CDX69112 AT4G35100.1 21798944
AT4G23400.1 CDX72515 AT4G35100.1 21798944
AT4G23400.1 CDX76314 AT4G35100.1 21798944
AT4G23400.1 CDY17511 AT4G35100.1 21798944
AT4G23400.1 CDY52648 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY10936 Canola plasma membrane 97.56 97.56
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 97.21 97.21
AT4G23400.1 Thale cress plasma membrane 96.17 96.17
CDY51161 Canola cytosol, peroxisome, plasma membrane 91.29 91.61
CDX89115 Canola plasma membrane 71.78 91.56
CDY07221 Canola cytosol, peroxisome, plasma membrane 90.94 91.26
CDY38017 Canola plasma membrane 90.94 91.26
CDX74334 Canola cytosol, peroxisome, plasma membrane 91.29 90.97
CDX90046 Canola cytosol, peroxisome, plasma membrane 90.59 90.91
CDY18886 Canola cytosol, peroxisome, plasma membrane 90.59 90.91
CDY27346 Canola cytosol, peroxisome, plasma membrane 90.59 90.91
CDY37078 Canola cytosol, peroxisome, plasma membrane 90.59 90.91
CDY66912 Canola extracellular 65.16 90.78
CDX91911 Canola cytosol, peroxisome, plasma membrane 90.94 90.62
CDX74777 Canola cytosol, peroxisome, plasma membrane 90.24 90.56
CDX71738 Canola plasma membrane 89.9 90.21
CDX83385 Canola cytosol, peroxisome, plasma membrane 89.9 90.21
GSMUA_AchrUn_... Banana extracellular 59.58 90.0
CDX95670 Canola cytosol, peroxisome, plasma membrane 89.55 89.86
CDY48920 Canola plasma membrane 89.55 89.86
TraesCS6B01G398000.1 Wheat extracellular 40.07 89.84
GSMUA_Achr5P12400_001 Banana extracellular 58.88 88.95
GSMUA_Achr8P11540_001 Banana extracellular 58.88 88.95
VIT_13s0067g00220.t01 Wine grape plasma membrane 88.15 88.46
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 87.8 87.5
GSMUA_AchrUn_... Banana extracellular 57.84 87.37
TraesCS6B01G279200.1 Wheat plastid 87.8 86.9
PGSC0003DMT400000151 Potato cytosol, peroxisome, plasma membrane 86.06 86.67
HORVU6Hr1G064140.1 Barley golgi, peroxisome, plasma membrane 87.11 86.21
Solyc01g094690.2.1 Tomato nucleus 85.37 85.96
TraesCS6D01G227500.1 Wheat golgi 86.76 85.86
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 86.41 85.81
Os04t0559700-01 Rice plasma membrane 86.06 85.76
KRH59918 Soybean peroxisome 85.71 85.71
KRH27918 Soybean plasma membrane 85.37 85.66
KRH77555 Soybean plasma membrane 85.37 85.66
EES07484 Sorghum plasma membrane 86.06 85.47
KRH41192 Soybean endoplasmic reticulum 86.06 85.47
Zm00001d017526_P001 Maize plasma membrane 86.06 85.47
PGSC0003DMT400012780 Potato cytosol, peroxisome, plasma membrane 85.71 85.42
Os02t0666200-01 Rice plasma membrane 85.71 85.12
Solyc12g056220.1.1 Tomato plastid 85.37 85.07
Zm00001d002690_P001 Maize plasma membrane 85.37 85.07
Zm00001d051403_P001 Maize plasma membrane 86.41 84.93
CDY66913 Canola cytosol, mitochondrion, nucleus 13.59 84.78
EES11257 Sorghum cytosol, peroxisome, plasma membrane 85.02 84.72
KRH66037 Soybean golgi, peroxisome, plasma membrane 83.62 84.51
PGSC0003DMT400014809 Potato peroxisome 84.32 84.32
PGSC0003DMT400053479 Potato plasma membrane 83.97 84.27
Solyc08g008050.2.1 Tomato peroxisome 83.97 83.97
Solyc08g081190.2.1 Tomato plastid 83.62 83.92
PGSC0003DMT400032134 Potato cytosol, peroxisome, plasma membrane 83.28 83.57
Solyc03g096290.2.1 Tomato nucleus 83.28 83.57
TraesCS6B01G450000.1 Wheat unclear 84.67 83.22
TraesCS6D01G389400.1 Wheat plasma membrane 84.67 83.22
Zm00001d051872_P001 Maize plasma membrane 82.93 82.64
TraesCS6D01G389500.1 Wheat plasma membrane 83.97 82.53
KRH00178 Soybean golgi, peroxisome, plasma membrane 82.23 82.23
TraesCS6B01G450200.1 Wheat plastid 83.62 82.19
TraesCS5B01G178700.1 Wheat plasma membrane 83.28 81.85
TraesCS5D01G185400.1 Wheat plasma membrane 83.28 81.85
CDY15165 Canola plastid 91.64 81.17
OQU85985 Sorghum cytosol, peroxisome, plasma membrane 80.84 80.0
HORVU5Hr1G055200.4 Barley golgi, plastid 83.28 76.85
EER89434 Sorghum peroxisome 78.75 76.35
TraesCS2D01G404800.2 Wheat golgi, peroxisome, plasma membrane 81.18 74.2
CDY70391 Canola extracellular, golgi 39.37 71.07
CDX76314 Canola cytosol 68.64 70.11
CDX69112 Canola plasma membrane 68.29 69.75
CDY17511 Canola plasma membrane 68.29 69.75
CDY52648 Canola plasma membrane 68.29 69.75
CDY09192 Canola plasma membrane 62.37 69.11
CDX71032 Canola plasma membrane 62.37 68.85
CDX67611 Canola plasma membrane 68.29 68.53
CDY07519 Canola plasma membrane 68.29 68.53
CDX88767 Canola plasma membrane 62.02 68.46
CDY46758 Canola plasma membrane 66.9 67.84
CDX91340 Canola plasma membrane 67.25 67.72
CDY31523 Canola plasma membrane 61.32 67.69
CDX78265 Canola plasma membrane 67.25 67.48
TraesCS2A01G407700.2 Wheat golgi, peroxisome, plasma membrane 67.94 67.47
CDY46759 Canola plasma membrane 66.9 67.37
CDX72515 Canola golgi, plasma membrane 59.58 67.32
CDY53629 Canola cytosol 60.63 67.18
CDX73446 Canola peroxisome 66.9 67.13
CDX91341 Canola plasma membrane 66.55 67.02
CDX78177 Canola plasma membrane 66.9 66.9
CDY56697 Canola plasma membrane 66.9 66.9
CDY13298 Canola plasma membrane 66.55 66.55
CDX74983 Canola cytosol, peroxisome, plasma membrane 45.3 65.99
CDY07681 Canola plasma membrane 65.51 65.28
CDY14415 Canola cytosol, peroxisome, plasma membrane 65.16 64.93
KRH75838 Soybean golgi, peroxisome, plasma membrane 80.84 63.91
CDX74984 Canola cytosol, peroxisome, plasma membrane 67.25 62.26
CDX97733 Canola endoplasmic reticulum, extracellular 31.36 36.29
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 31.36 36.29
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 31.36 36.14
CDX82410 Canola plasma membrane 31.01 35.74
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 31.01 35.74
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 25.09 34.29
CDY66321 Canola plasma membrane 31.71 34.21
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 29.62 34.0
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 29.62 34.0
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 29.62 33.6
CDX68239 Canola cytosol 31.01 33.58
CDY11123 Canola cytosol 31.01 33.58
CDY48045 Canola golgi, mitochondrion, plasma membrane 31.01 33.46
CDY07142 Canola cytosol 29.27 33.33
CDY19176 Canola plasma membrane 31.01 33.33
CDY69446 Canola cytosol 29.27 33.33
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 28.92 33.07
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 28.92 33.07
CDY26214 Canola plasma membrane 30.66 32.96
CDX96453 Canola cytosol 30.31 32.83
CDX81850 Canola golgi, mitochondrion, plasma membrane 30.31 32.58
CDY21731 Canola golgi, mitochondrion, plasma membrane 30.31 32.58
CDX72962 Canola plasma membrane 29.97 32.45
CDY28539 Canola plasma membrane 28.57 32.41
CDY48983 Canola plasma membrane 28.57 32.41
CDY51678 Canola plasma membrane, vacuole 28.22 32.4
CDY66645 Canola plastid 24.74 32.13
CDY67380 Canola plastid 24.74 32.13
CDX83623 Canola golgi, plasma membrane, plastid 28.22 32.02
CDY13639 Canola plasma membrane 28.22 32.02
CDX75873 Canola extracellular, golgi, vacuole 30.66 32.0
CDX77009 Canola cytosol, plasma membrane, vacuole 27.53 31.73
CDY53270 Canola plasma membrane 27.53 31.47
CDY35336 Canola extracellular 15.68 31.47
CDY47413 Canola mitochondrion, plastid 25.09 27.91
CDX99048 Canola mitochondrion, plastid 24.74 27.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078DXX1InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX94185
ProteinID:CDX94185ProteinID:CDX94185.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00157116001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF169SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0004EE24F7SEG:seg
Description
BnaC07g38190D
Coordinates
chrLK031879:+:1148813..1150253
Molecular Weight (calculated)
30519.3 Da
IEP (calculated)
9.291
GRAVY (calculated)
0.412
Length
287 amino acids
Sequence
(BLAST)
001: MEGKEEDVNV GANKFPERQP IGTAAQTEGK DYKEPPPAPF FEPGELKSWS FYRAGIAEFI AAFLFLYVTV LTVLGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRTVFYIVMQ CLGAICGAGV VKGFQPGPYH ANGGGANLVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HAWGDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKT
Best Arabidopsis Sequence Match ( AT1G01620.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS
Arabidopsis Description
PIP1-3TMP-B [Source:UniProtKB/TrEMBL;Acc:A0A178WIA6]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.