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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plasma membrane: 18260611
plasma membrane: 18557835
vacuole: 18557835
plasma membrane: 19502382
nucleus: 19621931
plasma membrane: 27800704
extracellular: 28232208
msms PMID: 27800704 doi
J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID: 19502382 doi
M Fujiwara, S Hamada, M Hiratsuka, Y Fukao, T Kawasaki, K Shimamoto
Laboratory of Plant Protein Analysis, Plant Education Unit, Nara Institute of Science and Technology, Takayama, Ikoma, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 18260611 doi
SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic
Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os04t0233400-01
Os07t0448800-01
Os09t0529350-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 Os04t0233400-01 AT2G16850.1 21798944
AT1G01620.1 Os07t0448800-01 AT2G37180.1 21798944
AT1G01620.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G00430.1 Os04t0233400-01 AT2G16850.1 21798944
AT4G00430.1 Os07t0448800-01 AT2G37180.1 21798944
AT4G00430.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G00430.1 Os09t0529350-01 AT4G24090.1 21798944
AT4G23400.1 Os07t0448800-01 AT2G37180.1 21798944
AT4G23400.1 Os07t0448800-01 AT3G54820.1 21798944
AT4G23400.1 Os04t0233400-01 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
GSMUA_AchrUn_... Banana extracellular 63.54 96.32
Os02t0666200-01 Rice plasma membrane 93.06 92.73
AT4G23400.1 Thale cress plasma membrane 88.89 89.2
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 88.19 88.81
CDY38017 Canola plasma membrane 87.85 88.46
CDX89115 Canola plasma membrane 69.1 88.44
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 87.85 88.15
AT3G61430.1 Thale cress plasma membrane 87.5 88.11
CDX83385 Canola cytosol, peroxisome, plasma membrane 87.5 88.11
Solyc01g094690.2.1 Tomato nucleus 87.15 88.07
CDY66912 Canola extracellular 62.85 87.86
CDX71738 Canola plasma membrane 87.15 87.76
CDX95670 Canola cytosol, peroxisome, plasma membrane 87.15 87.76
Solyc03g096290.2.1 Tomato nucleus 87.15 87.76
CDX74777 Canola cytosol, peroxisome, plasma membrane 87.15 87.76
CDX90046 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDY07221 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDY18886 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDY27346 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDY37078 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDY48920 Canola plasma membrane 86.81 87.41
CDY51161 Canola cytosol, peroxisome, plasma membrane 86.81 87.41
CDX74334 Canola cytosol, peroxisome, plasma membrane 87.15 87.15
CDY10936 Canola plasma membrane 86.81 87.11
CDY66913 Canola cytosol, mitochondrion, nucleus 13.89 86.96
CDX91911 Canola cytosol, peroxisome, plasma membrane 86.81 86.81
Solyc08g008050.2.1 Tomato peroxisome 86.11 86.41
Solyc08g081190.2.1 Tomato plastid 85.76 86.36
CDX94185 Canola plasma membrane 85.76 86.06
Solyc12g056220.1.1 Tomato plastid 85.42 85.42
CDY15165 Canola plastid 87.85 78.09
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 79.51 76.08
KRG97766 Soybean endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 35.07 75.37
Os04t0233400-01 Rice plasma membrane 66.67 68.09
Os07t0448400-01 Rice plasma membrane 31.6 67.41
Os02t0629200-02 Rice plasma membrane 66.67 66.67
Os07t0448100-01 Rice plasma membrane 65.97 66.43
Os04t0521100-01 Rice plasma membrane 66.32 65.86
Os07t0448800-01 Rice plasma membrane 65.97 65.52
PGSC0003DMT400064008 Potato extracellular 23.96 61.61
Os09t0541000-01 Rice cytosol, plasma membrane, vacuole 61.11 60.69
Os03t0861300-01 Rice cytosol, peroxisome, plasma membrane 56.25 57.86
Os07t0448200-00 Rice mitochondrion, nucleus, plastid 55.21 57.4
VIT_18s0001g06480.t01 Wine grape cytosol, extracellular, vacuole 27.78 56.74
VIT_12s0034g00250.t01 Wine grape cytosol, extracellular, plastid 21.53 52.1
Os10t0481100-01 Rice plasma membrane 14.93 46.24
Os02t0658100-01 Rice vacuole 24.65 34.47
Os06t0336200-01 Rice nucleus 28.47 33.06
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 27.78 31.87
Os03t0146100-01 Rice nucleus 27.08 31.2
Os10t0492600-01 Rice plastid 28.12 30.68
Os04t0550800-01 Rice endoplasmic reticulum, plasma membrane 28.12 30.11
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 13.89 28.17
Os04t0527900-01 Rice plastid 25.69 27.92
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 23.96 26.95
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 23.26 21.34
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EntrezGene:9270874EMBL:AK098849InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
ProteinID:BAF15455.1ProteinID:BAS90462.1ProteinID:CAE01842.2ProteinID:EAZ31617.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833
GO:GO:0008150GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0034220
GO:GO:0055085InterPro:IPR023271InterPro:MIPInterPro:MIP_CSEnsemblPlantsGene:Os04g0559700EnsemblPlants:Os04t0559700-01
PFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF262UniProt:Q7XSQ9
SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0000E58340RefSeq:XP_015635466.1:
Description
PLASMA MEMBRANE INTRINSIC PROTEIN 1;2Similar to Aquaporin PIP1.1. (Os04t0559700-01)
Coordinates
chr4:+:28046582..28048410
Molecular Weight (calculated)
30749.4 Da
IEP (calculated)
8.839
GRAVY (calculated)
0.350
Length
288 amino acids
Sequence
(BLAST)
001: MEGKEEDVRL GANKFSERQP IGTAAQGSDD KDYKEPPPAP LFEPGELKSW SFYRAGIAEF MATFLFLYIT VLTVMGVNNS TSKCATVGIQ GIAWSFGGMI
101: FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRALFYMVM QCLGAICGAG VVKGFQKGLY ETTGGGANVV APGYTKGDGL GAEIVGTFIL VYTVFSATDA
201: KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYNR GHAWDDHWIF WVGPFIGAAL AAIYHQVVIR AIPFKSRS
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.