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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • vacuole 4
  • cytosol 1
  • extracellular 1
  • endoplasmic reticulum 1
  • plasma membrane 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
 nucleus: 29651780
plasma membrane: 18557835
vacuole: 18557835
nucleus: 19621931
plastid: 21433289
extracellular: 24083427
nucleus: 26035336
plastid: 27992503
extracellular: 28232208
gfp PMID: 29651780 doi
TTH Chu, TG Hoang, DC Trinh, C Bureau, D Meynard, A Vernet, M Ingouff, NV Do, C Périn, E Guiderdoni, P Gantet, C Maurel, DT Luu
BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France., BPMP, Univ Montpellier, CNRS, INRA, SupAgro, Montpellier, France. luu@supagro.fr., CIRAD, UMR AGAP, 34398, Montpellier, France., IRD, LMI RICE, Agricultural Genetics Institute, Pham Van Dong road, Co Nhue, Tuliem, Hanoï, Vietnam., National key laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, Pham Van Dong, Co Nhue, Tuliem, Hanoi, Vietnam., University of Science and Technology of Hanoi, LMI RICE, 18 Hoang Quoc Viet, Nghia Do, Cau Giay, Hanoi, Vietnam., Université de Montpellier, CIRAD-INRA-Montpellier SupAgro, 34000, Montpellier, France., Université de Montpellier, UMR DIADE, 911 Avenue Agropolis, 34394, Montpellier Cedex 5, France.
msms PMID: 26035336 doi
M Li, X Yin, K Sakata, P Yang, S Komatsu
§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.
msms PMID: 18557835 doi
SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis
Department of Biology Area 9, University of York, York YO10 5DD, UK.
msms PMID: 27992503 doi
S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
msms PMID: 21433289 doi
S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky
Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.
msms PMID: 24083427 doi
T Shinano, T Yoshimura, T Watanabe, Y Unno, M Osaki, Y Nanjo, S Komatsu
Agricultural Radiation Research Center, NARO Tohoku Agricultural Research Center , 50, Harajyukuminami, Arai, Fukushima 960-2156, Japan.
msms PMID: 19621931 doi
T Aki, S Yanagisawa
Department of Applied Biological Chemistry, The University of Tokyo, Japan.
msms PMID: 28232208 doi
Y Wang, R Gupta, W Song, HH Huh, SE Lee, J Wu, GK Agrawal, R Rakwal, KY Kang, SR Park, ST Kim
Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea., Department of Plant Bioscience, Life and Industry Convergence Research Institute, Pusan National University, Miryang 627-707, South Korea. Electronic address: stkim71@pusan.ac.kr., Department of Plant Microbe Interactions, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Division of Applied Life Science (BK21 Program), Gyeongsang National University, Jinju, South Korea., National Academy of Agricultural Science, Rural Development Administration, Suwon 441-707, South Korea. Electronic address: srpark@korea.kr., Plant Proteomics Group, Max Planck Institute for Plant Breeding Research, Carl-von-Linneweg 10, Cologne 50829, Germany., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal., Research Laboratory for Biotechnology and Biochemistry (RLABB), GPO 13265, Kathmandu 44600, Nepal; GRADE (Global Research Arch for Developing Education) Academy, Pvt. Ltd, Adarsh Nagar-13, Birgunj 44300, Nepal; Faculty of Health and Sport Sciences, Tsukuba International Academy for Sport Studies (TIAS), University of Tsukuba, 1-1-1 Tennodai, Tsukuba, 305-8574, Ibaraki, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Os03t0146100-01
Os04t0527900-01
Os06t0336200-01
Os07t0448800-01
Os10t0492600-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36830.1 Os04t0527900-01 AT1G73190.1 21798944
AT2G36830.1 Os10t0492600-01 AT1G73190.1 21798944
AT3G26520.1 Os04t0527900-01 AT1G73190.1 23163742
AT3G26520.1 Os10t0492600-01 AT1G73190.1 23163742
AT3G26520.1 Os06t0336200-01 AT3G16240.1 23163742
AT3G26520.1 Os03t0146100-01 AT3G26520.1 23163742
AT3G26520.1 Os07t0448800-01 AT3G53420.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d027652_P001 Maize plasma membrane 95.2 95.2
EER92857 Sorghum cytosol 94.0 94.0
TraesCS4B01G310900.1 Wheat unclear 90.4 90.4
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 90.0 90.0
HORVU4Hr1G079230.1 Barley vacuole 89.6 89.6
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 86.4 86.4
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 86.4 86.4
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 86.0 86.0
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 86.8 84.44
CDY66645 Canola plastid 72.8 82.35
CDY67380 Canola plastid 72.8 82.35
Bra017222.1-P Field mustard cytosol 82.4 82.07
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 81.6 81.27
Solyc06g074820.2.1 Tomato plastid 81.2 81.2
VIT_08s0007g04780.t01 Wine grape cytosol 81.2 80.88
CDY53270 Canola plasma membrane 81.2 80.88
PGSC0003DMT400018375 Potato cytosol 80.8 80.8
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 80.0 79.68
CDY48983 Canola plasma membrane 79.6 78.66
CDY28539 Canola plasma membrane 79.6 78.66
CDY13639 Canola plasma membrane 79.6 78.66
CDX83623 Canola golgi, plasma membrane, plastid 79.6 78.66
Bra032937.1-P Field mustard plasma membrane 79.6 78.66
Bra025210.1-P Field mustard plasma membrane 79.2 78.26
KRH67767 Soybean mitochondrion 77.6 77.6
AT3G26520.1 Thale cress plasma membrane 78.4 77.47
KRG96046 Soybean nucleus 77.2 77.2
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 72.8 72.51
Os02t0658100-01 Rice vacuole 54.0 65.53
Os06t0336200-01 Rice nucleus 61.2 61.69
Os04t0550900-00 Rice endoplasmic reticulum, extracellular, vacuole 30.4 53.52
Os10t0492600-01 Rice plastid 55.6 52.65
Os01t0232000-00 Rice cytosol, endoplasmic reticulum, plasma membrane 51.6 51.39
Os04t0527900-01 Rice plastid 53.6 50.57
Os01t0232100-01 Rice cytosol, endoplasmic reticulum, extracellular 46.0 44.92
Os04t0550800-01 Rice endoplasmic reticulum, plasma membrane 39.6 36.8
Os05t0231700-01 Rice golgi, mitochondrion, plasma membrane 46.0 36.62
Os07t0448100-01 Rice plasma membrane 34.8 30.42
Os07t0448400-01 Rice plasma membrane 16.4 30.37
Os07t0448800-01 Rice plasma membrane 35.2 30.34
Os03t0861300-01 Rice cytosol, peroxisome, plasma membrane 33.6 30.0
Os02t0629200-02 Rice plasma membrane 34.4 29.86
Os09t0541000-01 Rice cytosol, plasma membrane, vacuole 33.6 28.97
Os04t0233400-01 Rice plasma membrane 32.4 28.72
Os04t0521100-01 Rice plasma membrane 33.2 28.62
Os04t0559700-01 Rice plasma membrane 31.2 27.08
Os07t0448200-00 Rice mitochondrion, nucleus, plastid 30.0 27.08
Os02t0666200-01 Rice plasma membrane 30.8 26.64
Os10t0481100-01 Rice plasma membrane 8.4 22.58
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3EntrezGene:4331608UniProt:A4ZYN4ProteinID:AAK98737.1ProteinID:ABF93961.1
EMBL:AK058322EMBL:AK060994EMBL:AK068986EMBL:AK104123InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
ProteinID:BAF10870.2ProteinID:BAS82275.1ProteinID:BAS82276.1EMBL:D25534ProteinID:EAZ25574.1EMBL:EF495246
GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005773GO:GO:0005774GO:GO:0005886GO:GO:0005887GO:GO:0006810GO:GO:0006833
GO:GO:0008150GO:GO:0009705GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021
GO:GO:0034220GO:GO:0042807GO:GO:0055085InterPro:IPR023271EMBL:KM051838InterPro:MIP
InterPro:MIP_CSEnsemblPlantsGene:Os03g0146100EnsemblPlants:Os03t0146100-01UniProt:P50156PFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF55SUPFAM:SSF81338TMHMM:TMhelixUniParc:UPI0000000CEE
RefSeq:XP_015631095.1SEG:seg::::
Description
TONOPLAST INTRINSIC PROTEIN 1;1Tonoplast intrinsic protein (Tonoplast water channel). (Os03t0146100-01);Similar to Tonoplast intrinsic protein. (Os03t0146100-03);Similar to cDNA clone:001-014-B06, full insert sequence. (Os03t0146100-05)
Coordinates
chr3:-:2562812..2564646
Molecular Weight (calculated)
25701.3 Da
IEP (calculated)
6.505
GRAVY (calculated)
0.823
Length
250 amino acids
Sequence
(BLAST)
001: MPIRNIAVGS HQEVYHPGAL KAALAEFIST LIFVFAGQGS GMAFSKLTGG GATTPAGLIA AAVAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: FRGLLYWIAQ LLGSTVACFL LRFSTGGLAT GTFGLTGVSV WEALVLEIVM TFGLVYTVYA TAVDPKKGSL GTIAPIAIGF IVGANILVGG AFDGASMNPA
201: VSFGPALVSW SWESQWVYWV GPLIGGGLAG VIYEVLFISH THEQLPTTDY
Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.