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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 1
  • vacuole 3
  • cytosol 2
  • extracellular 1
  • golgi 1
  • plasma membrane 2
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, plastid, secretory
BaCelLo:plastid
EpiLoc:vacuole
MultiLoc:cytosol
Plant-mPloc:vacuole
PProwler:secretory
WoLF PSORT:cytosol
YLoc:plasma membrane
 nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913
msms PMID: 21132161 doi
B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27291164 doi
X Yin, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92517
KRG93712
KRG96046
KRH09321
KRH09912
KRH23420
KRH34280
KRH38823
KRH67767

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36830.1 KRG92517 AT1G73190.1 21798944
AT2G36830.1 KRH09321 AT1G73190.1 21798944
AT2G36830.1 KRH34280 AT1G73190.1 21798944
AT2G36830.1 KRH38823 AT1G73190.1 21798944
AT3G26520.1 KRG92517 AT1G73190.1 23163742
AT3G26520.1 KRH09321 AT1G73190.1 23163742
AT3G26520.1 KRH34280 AT1G73190.1 23163742
AT3G26520.1 KRH38823 AT1G73190.1 23163742
AT3G26520.1 KRG93712 AT3G16240.1 23163742
AT3G26520.1 KRH09912 AT3G16240.1 23163742
AT3G26520.1 KRH23420 AT3G16240.1 23163742
AT3G26520.1 KRG96046 AT3G26520.1 23163742
AT3G26520.1 KRH67767 AT3G26520.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH67767 Soybean mitochondrion 96.8 96.8
VIT_08s0007g04780.t01 Wine grape cytosol 83.6 83.27
Bra017222.1-P Field mustard cytosol 83.6 83.27
CDY66645 Canola plastid 73.2 82.81
CDY67380 Canola plastid 73.2 82.81
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 82.8 82.47
CDY53270 Canola plasma membrane 82.4 82.07
CDY13639 Canola plasma membrane 81.6 80.63
PGSC0003DMT400072432 Potato cytosol 79.6 80.24
Bra025210.1-P Field mustard plasma membrane 81.2 80.24
CDX83623 Canola golgi, plasma membrane, plastid 81.2 80.24
Solyc10g083880.1.1 Tomato plastid 78.8 79.44
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 79.2 79.2
CDY48983 Canola plasma membrane 78.8 77.87
CDY28539 Canola plasma membrane 78.8 77.87
Bra032937.1-P Field mustard plasma membrane 78.8 77.87
AT3G26520.1 Thale cress plasma membrane 78.4 77.47
Os03t0146100-01 Rice nucleus 77.2 77.2
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 77.2 77.2
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 76.8 76.8
KRH24847 Soybean endoplasmic reticulum, plasma membrane, vacuole 74.8 76.33
KRH23017 Soybean cytosol, plasma membrane, vacuole 75.6 75.0
KRH29856 Soybean cytosol, plasma membrane, vacuole 75.2 74.6
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 74.8 74.5
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 74.4 74.4
TraesCS4B01G310900.1 Wheat unclear 74.4 74.4
Zm00001d027652_P001 Maize plasma membrane 74.0 74.0
EER92857 Sorghum cytosol 74.0 74.0
HORVU4Hr1G079230.1 Barley vacuole 73.6 73.6
KRH10300 Soybean endoplasmic reticulum, extracellular 46.4 72.5
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 72.4 72.11
KRH70511 Soybean cytosol 69.6 69.05
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 70.8 68.87
KRH01591 Soybean cytosol 68.4 67.86
KRH36204 Soybean cytosol, extracellular, mitochondrion, plasma membrane 65.2 64.68
KRH09912 Soybean endoplasmic reticulum, plasma membrane, vacuole 63.6 64.37
KRG93712 Soybean plasma membrane, vacuole 60.8 64.14
KRH23420 Soybean plasma membrane, vacuole 62.8 63.56
KRH19959 Soybean mitochondrion 63.2 63.2
KRH44312 Soybean extracellular 62.0 62.5
KRH47241 Soybean mitochondrion 61.6 62.1
KRH28112 Soybean mitochondrion 61.2 61.45
KRH77347 Soybean mitochondrion 60.8 61.04
KRG90553 Soybean extracellular 58.8 60.49
KRH38823 Soybean nucleus 59.2 58.04
KRH09321 Soybean cytosol, mitochondrion, plasma membrane 58.4 57.25
KRH34280 Soybean endoplasmic reticulum 56.4 55.51
KRG92517 Soybean cytosol 55.6 54.72
KRH62059 Soybean cytosol, plasma membrane, vacuole 49.6 50.41
KRH52727 Soybean cytosol 49.2 50.0
KRH23943 Soybean plasma membrane 29.6 40.44
KRH39857 Soybean plastid 39.2 38.89
KRH16406 Soybean extracellular 19.6 32.03
KRH60692 Soybean mitochondrion 34.8 31.64
KRG91899 Soybean plasma membrane 35.6 31.34
KRH08523 Soybean plasma membrane 35.2 30.88
KRH70183 Soybean mitochondrion 35.2 30.88
KRH08522 Soybean plasma membrane 35.2 30.88
KRH26410 Soybean golgi, peroxisome, plasma membrane 35.2 30.66
KRH22889 Soybean golgi, peroxisome, plasma membrane 35.2 30.66
KRH51390 Soybean plasma membrane 34.0 30.58
KRH70184 Soybean plasma membrane 34.4 30.18
KRG97766 Soybean endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 16.0 29.85
KRH34875 Soybean plasma membrane 35.2 29.73
KRH25011 Soybean mitochondrion 33.6 29.37
KRH29919 Soybean mitochondrion 33.6 29.37
KRG95980 Soybean plasma membrane 33.2 29.12
KRH67688 Soybean plasma membrane 33.2 29.02
KRH00178 Soybean golgi, peroxisome, plasma membrane 32.8 28.57
KRH27918 Soybean plasma membrane 32.0 27.97
KRH77555 Soybean plasma membrane 31.6 27.62
KRH66037 Soybean golgi, peroxisome, plasma membrane 31.2 27.46
KRH14983 Soybean mitochondrion 31.6 27.34
KRH59918 Soybean peroxisome 31.2 27.18
KRH41192 Soybean endoplasmic reticulum 31.2 26.99
KRH31119 Soybean endoplasmic reticulum 31.2 26.99
KRH73156 Soybean golgi, peroxisome, plasma membrane 31.6 24.76
KRH75838 Soybean golgi, peroxisome, plasma membrane 31.6 21.76
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3UniProt:A0A0R4J629EMBL:ACUP02012143InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
EnsemblPlantsGene:GLYMA_19G186100GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085InterPro:IPR023271EnsemblPlants:KRG96046
ProteinID:KRG96046ProteinID:KRG96046.1InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783
ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelixUniParc:UPI0001B63B83
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr19:-:44461599..44463026
Molecular Weight (calculated)
25535.1 Da
IEP (calculated)
6.507
GRAVY (calculated)
0.867
Length
250 amino acids
Sequence
(BLAST)
001: MPIRNIAVGR PEEATHPDTL KAALAEFIST FIFVFAGSGS GIAYNKLTDN GAATPAGLIS ASIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITF
101: LRGIVYVIAQ LLGSIVASLL LAFVTASTVP AFGLSAGVGV GNALVLEIVM TFGLVYTVYA TAIDPKKGNL GIIAPIAIGF IVGANILLGG AFSGAAMNPA
201: VTFGPAVVSW TWTNHWIYWA GPLIGGGIAG LVYEVVFISH THEQLPTTDY
Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [golgi,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.