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Wheat
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Wheat
Subcellular Localization
min:
: max

 
Winner_takes_all: unclear

Predictor Summary:
  • golgi 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 2
Predictors GFP MS/MS Papers
Winner Takes All:unclear
Any Predictor:golgi, plasma membrane, vacuole
MultiLoc:golgi
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
 unclear: 25769308
msms PMID: 25769308 doi
AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré
INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
TraesCS1A01G165400.1
TraesCS1B01G182200.1
TraesCS1D01G175200.1
TraesCS2A01G198500.1
TraesCS2A01G374400.1
TraesCS2B01G225900.1
TraesCS2B01G391400.1
TraesCS2D01G206300.1
TraesCS2D01G370800.1
TraesCS4A01G410800.1
TraesCS4B01G310900.1
TraesCS4D01G308800.1
TraesCS7A01G331300.1
TraesCS7B01G243000.1
TraesCS7D01G339600.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36830.1 TraesCS1A01G165400.1 AT1G73190.1 21798944
AT2G36830.1 TraesCS1B01G182200.1 AT1G73190.1 21798944
AT2G36830.1 TraesCS1D01G175200.1 AT1G73190.1 21798944
AT2G36830.1 TraesCS2A01G374400.1 AT1G73190.1 21798944
AT2G36830.1 TraesCS2B01G391400.1 AT1G73190.1 21798944
AT2G36830.1 TraesCS2D01G370800.1 AT1G73190.1 21798944
AT3G26520.1 TraesCS1A01G165400.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS1B01G182200.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS1D01G175200.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS2A01G374400.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS2B01G391400.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS2D01G370800.1 AT1G73190.1 23163742
AT3G26520.1 TraesCS7A01G331300.1 AT3G16240.1 23163742
AT3G26520.1 TraesCS7B01G243000.1 AT3G16240.1 23163742
AT3G26520.1 TraesCS7D01G339600.1 AT3G16240.1 23163742
AT3G26520.1 TraesCS4A01G410800.1 AT3G26520.1 23163742
AT3G26520.1 TraesCS4B01G310900.1 AT3G26520.1 23163742
AT3G26520.1 TraesCS4D01G308800.1 AT3G26520.1 23163742
AT3G26520.1 TraesCS2A01G198500.1 AT3G53420.1 23163742
AT3G26520.1 TraesCS2B01G225900.1 AT3G53420.1 23163742
AT3G26520.1 TraesCS2D01G206300.1 AT3G53420.1 23163742
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 99.6 99.6
HORVU4Hr1G079230.1 Barley vacuole 99.2 99.2
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 96.0 93.39
EER92857 Sorghum cytosol 91.6 91.6
Os03t0146100-01 Rice nucleus 90.4 90.4
Zm00001d027652_P001 Maize plasma membrane 90.0 90.0
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 84.0 84.0
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 82.0 82.0
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 80.4 80.4
Solyc06g074820.2.1 Tomato plastid 80.0 80.0
PGSC0003DMT400018375 Potato cytosol 79.6 79.6
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 79.6 79.28
CDY66645 Canola plastid 70.0 79.19
CDY67380 Canola plastid 70.0 79.19
Bra017222.1-P Field mustard cytosol 78.0 77.69
CDY53270 Canola plasma membrane 76.8 76.49
VIT_08s0007g04780.t01 Wine grape cytosol 76.0 75.7
AT3G26520.1 Thale cress plasma membrane 76.4 75.49
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 75.6 75.3
KRH67767 Soybean mitochondrion 75.2 75.2
CDY28539 Canola plasma membrane 75.6 74.7
Bra032937.1-P Field mustard plasma membrane 75.6 74.7
CDX83623 Canola golgi, plasma membrane, plastid 75.6 74.7
CDY48983 Canola plasma membrane 75.6 74.7
CDY13639 Canola plasma membrane 75.6 74.7
KRG96046 Soybean nucleus 74.4 74.4
Bra025210.1-P Field mustard plasma membrane 75.2 74.31
TraesCS3B01G608500.1 Wheat plasma membrane 70.4 69.84
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 69.6 69.32
TraesCS7B01G243000.1 Wheat plasma membrane 61.2 61.69
TraesCS6B01G275100.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 61.2 61.45
TraesCS2B01G433200.1 Wheat plasma membrane 59.2 59.68
TraesCS3B01G182200.1 Wheat endoplasmic reticulum, extracellular, vacuole 54.0 53.78
TraesCS1B01G182200.1 Wheat golgi 54.4 51.71
TraesCS2B01G391400.1 Wheat extracellular, plasma membrane, vacuole 51.2 48.3
TraesCS3B01G182400.1 Wheat plasma membrane 47.6 47.98
TraesCS4B01G349500.1 Wheat plasma membrane 45.6 44.71
TraesCS2B01G433300.1 Wheat endoplasmic reticulum 35.2 35.48
TraesCS6B01G398000.1 Wheat extracellular 17.2 33.59
TraesCS5B01G570800.1 Wheat golgi, peroxisome, plasma membrane 36.0 31.91
TraesCS2B01G225900.1 Wheat golgi 36.8 31.72
TraesCS7B01G002000.1 Wheat golgi, peroxisome, plasma membrane 35.6 31.34
TraesCS6B01G259000.1 Wheat golgi, peroxisome, plasma membrane 34.8 30.42
TraesCS7B01G003900.1 Wheat golgi, peroxisome, plasma membrane 34.8 29.9
TraesCS5B01G567600.1 Wheat golgi, peroxisome, plasma membrane 34.8 29.9
TraesCS7B01G003800.1 Wheat golgi, peroxisome, plasma membrane 34.4 29.76
TraesCS2B01G396800.1 Wheat golgi 34.4 29.66
TraesCS5B01G567500.1 Wheat golgi, peroxisome, plasma membrane 34.0 29.41
TraesCS2B01G077700.1 Wheat plasma membrane 32.8 28.87
TraesCS2B01G396700.2 Wheat plasma membrane 34.0 28.81
TraesCS4B01G362300.1 Wheat golgi, peroxisome, plasma membrane 33.6 28.77
TraesCS5B01G332500.1 Wheat plasma membrane 33.2 28.52
TraesCS6B01G279200.1 Wheat plastid 32.4 27.93
TraesCS6B01G114400.1 Wheat golgi, peroxisome, plasma membrane 32.8 27.8
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 32.0 27.78
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 32.0 27.68
TraesCS6B01G450000.1 Wheat unclear 32.0 27.4
TraesCS6B01G450200.1 Wheat plastid 32.0 27.4
TraesCS5B01G178700.1 Wheat plasma membrane 31.6 27.05
TraesCS7B01G096000.1 Wheat golgi, peroxisome, plasma membrane 29.6 24.34
TraesCS4B01G027600.1 Wheat plasma membrane 25.6 21.99
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085
InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221
PANTHER:PTHR19139PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelixEnsemblPlantsGene:TraesCS4B01G310900EnsemblPlants:TraesCS4B01G310900.1
TIGR:cd00333SEG:seg::::
Description
No Description!
Coordinates
chr4B:-:601098750..601100247
Molecular Weight (calculated)
25757.4 Da
IEP (calculated)
6.508
GRAVY (calculated)
0.809
Length
250 amino acids
Sequence
(BLAST)
001: MPVSRIAVGS HREVYEVGAL KAALAEFIST LIFVFAGQGS GMAFSKLSPD GAATPAGLIS AAIAHAFALF VAVSVGANIS GGHVNPAVTF GAFVGGNITL
101: FRGLLYWIAQ LLGSTAACFL LRFSTGGLPT GTFGLTGIGA WEAVVLEIVM TFGLVYTVYA TAVDPKKGSL GTIAPIAIGF IVGANILVGG AFSGASMNPA
201: VSFGPALVSW EWGYQWVYWV GPLIGGGLAG VIYELLFISR THEQLPTTDY
Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [plasma membrane,golgi,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.