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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 3
  • golgi 2
  • extracellular 1
  • plasma membrane 2
  • endoplasmic reticulum 1
  • vacuole 2
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:golgi, nucleus, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:golgi
Predotar:plastid
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68239
CDX72962
CDX96453
CDY11123
CDY48045
CDY66321

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G36830.1 CDX68239 AT1G73190.1 21798944
AT2G36830.1 CDX72962 AT1G73190.1 21798944
AT2G36830.1 CDX96453 AT1G73190.1 21798944
AT2G36830.1 CDY11123 AT1G73190.1 21798944
AT2G36830.1 CDY48045 AT1G73190.1 21798944
AT2G36830.1 CDY66321 AT1G73190.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY66645 Canola plastid 100.0 100.0
Bra017222.1-P Field mustard cytosol 100.0 88.05
CDY53270 Canola plasma membrane 97.29 85.66
AT2G36830.1 Thale cress golgi, plasma membrane, vacuole 93.67 82.47
CDX83623 Canola golgi, plasma membrane, plastid 91.86 80.24
CDY13639 Canola plasma membrane 91.86 80.24
CDY48983 Canola plasma membrane 88.69 77.47
CDY28539 Canola plasma membrane 88.69 77.47
PGSC0003DMT400072432 Potato cytosol 85.07 75.81
VIT_08s0007g04780.t01 Wine grape cytosol 85.52 75.3
Solyc10g083880.1.1 Tomato plastid 84.16 75.0
KRH67767 Soybean mitochondrion 83.71 74.0
KRG96046 Soybean nucleus 82.81 73.2
Os03t0146100-01 Rice nucleus 82.35 72.8
GSMUA_Achr8P12920_001 Banana cytosol, plasma membrane, vacuole 81.45 72.0
GSMUA_Achr1P01270_001 Banana cytosol, plasma membrane, vacuole 81.0 71.6
GSMUA_Achr11P... Banana cytosol, extracellular, vacuole 80.54 71.2
EER92857 Sorghum cytosol 80.09 70.8
Zm00001d027652_P001 Maize plasma membrane 79.64 70.4
TraesCS4A01G410800.1 Wheat golgi, plasma membrane, vacuole 79.19 70.0
TraesCS4B01G310900.1 Wheat unclear 79.19 70.0
GSMUA_Achr5P19470_001 Banana endoplasmic reticulum, plasma membrane, vacuole 78.73 69.32
HORVU4Hr1G079230.1 Barley vacuole 78.28 69.2
VIT_06s0061g00730.t01 Wine grape cytosol, plasma membrane, vacuole 74.21 65.34
CDY07142 Canola cytosol 74.21 65.08
CDY69446 Canola cytosol 74.21 65.08
TraesCS4D01G308800.1 Wheat golgi, plasma membrane, vacuole 75.11 64.59
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 58.82 61.9
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 66.97 59.2
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 66.52 58.8
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 66.52 58.57
CDY51678 Canola plasma membrane, vacuole 66.06 58.4
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 66.06 58.17
CDX97733 Canola endoplasmic reticulum, extracellular 63.35 56.45
CDX82410 Canola plasma membrane 63.35 56.22
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 62.9 55.82
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 62.9 55.82
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 62.44 55.65
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 61.99 54.15
CDY48045 Canola golgi, mitochondrion, plasma membrane 61.54 51.13
CDX75873 Canola extracellular, golgi, vacuole 63.35 50.91
CDY66321 Canola plasma membrane 61.09 50.75
CDX72962 Canola plasma membrane 59.73 49.81
CDX96453 Canola cytosol 59.28 49.43
CDX68239 Canola cytosol 59.28 49.43
CDY11123 Canola cytosol 59.28 49.43
CDY35336 Canola extracellular 31.67 48.95
CDX81850 Canola golgi, mitochondrion, plasma membrane 57.92 47.94
CDX77009 Canola cytosol, plasma membrane, vacuole 53.85 47.79
CDY21731 Canola golgi, mitochondrion, plasma membrane 57.47 47.57
CDY26214 Canola plasma membrane 56.11 46.44
CDY19176 Canola plasma membrane 55.66 46.07
CDY47413 Canola mitochondrion, plastid 42.08 36.05
CDX99048 Canola mitochondrion, plastid 41.63 35.66
CDY66912 Canola extracellular 31.67 33.98
CDX89115 Canola plasma membrane 33.03 32.44
CDX72515 Canola golgi, plasma membrane 36.2 31.5
CDY70391 Canola extracellular, golgi 22.17 30.82
CDY09192 Canola plasma membrane 35.75 30.5
CDX71032 Canola plasma membrane 35.29 30.0
CDY31523 Canola plasma membrane 35.29 30.0
CDX88767 Canola plasma membrane 35.29 30.0
CDY53629 Canola cytosol 33.94 28.96
CDX69112 Canola plasma membrane 36.2 28.47
CDX76314 Canola cytosol 36.2 28.47
CDY52648 Canola plasma membrane 36.2 28.47
CDY07681 Canola plasma membrane 36.65 28.12
CDY14415 Canola cytosol, peroxisome, plasma membrane 36.65 28.12
CDY17511 Canola plasma membrane 35.75 28.11
CDY46759 Canola plasma membrane 35.75 27.72
CDY56697 Canola plasma membrane 35.75 27.53
CDX78177 Canola plasma membrane 35.75 27.53
CDX73446 Canola peroxisome 35.29 27.27
CDX78265 Canola plasma membrane 35.29 27.27
CDX91341 Canola plasma membrane 34.84 27.02
CDY46758 Canola plasma membrane 34.39 26.86
CDX91340 Canola plasma membrane 34.39 26.67
CDX67611 Canola plasma membrane 34.39 26.57
CDX90046 Canola cytosol, peroxisome, plasma membrane 34.39 26.57
CDY07519 Canola plasma membrane 34.39 26.57
CDY13298 Canola plasma membrane 34.39 26.48
CDY07221 Canola cytosol, peroxisome, plasma membrane 33.94 26.22
CDX91911 Canola cytosol, peroxisome, plasma membrane 33.94 26.04
CDY51161 Canola cytosol, peroxisome, plasma membrane 33.48 25.87
CDY48920 Canola plasma membrane 33.48 25.87
CDX71738 Canola plasma membrane 33.48 25.87
CDX74334 Canola cytosol, peroxisome, plasma membrane 33.48 25.69
CDX83385 Canola cytosol, peroxisome, plasma membrane 33.03 25.52
CDY18886 Canola cytosol, peroxisome, plasma membrane 33.03 25.52
CDY27346 Canola cytosol, peroxisome, plasma membrane 33.03 25.52
CDY37078 Canola cytosol, peroxisome, plasma membrane 33.03 25.52
CDX74777 Canola cytosol, peroxisome, plasma membrane 33.03 25.52
CDY10936 Canola plasma membrane 33.03 25.44
CDX95670 Canola cytosol, peroxisome, plasma membrane 32.58 25.17
CDY38017 Canola plasma membrane 32.58 25.17
CDX74983 Canola cytosol, peroxisome, plasma membrane 22.17 24.87
CDX94185 Canola plasma membrane 32.13 24.74
CDX74984 Canola cytosol, peroxisome, plasma membrane 34.39 24.52
CDY15165 Canola plastid 33.48 22.84
CDY66913 Canola cytosol, mitochondrion, nucleus 0.0 0.0
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.3GO:A0A078JJL9UniProt:A0A078JJL9InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
ProteinID:CDY66645.1EnsemblPlants:CDY67380ProteinID:CDY67380ProteinID:CDY67380.1GO:GO:0003674GO:GO:0005215
GO:GO:0005575GO:GO:0006810GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0016021
GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00062861001InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230
PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF265SUPFAM:SSF81338TMHMM:TMhelix
UniParc:UPI0004EE7460SEG:seg::::
Description
BnaAnng24130DBnaAnng22640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JJL9]
Coordinates
chrLK036045:+:32..1323
Molecular Weight (calculated)
22419.3 Da
IEP (calculated)
6.501
GRAVY (calculated)
0.918
Length
221 amino acids
Sequence
(BLAST)
001: MIFVFAGSGS GMAFNKLTEN GATTPAGLVA ASLAHAFGLF VAVSVGANIS GGHVNPAVTF GAFVGGNITL LRGILYWIAQ LLGSVVACLL LKFATGGLVV
101: PAFGLSAGVG VSNALVFEIV MTFGLVYTVY ATAVDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP AVAFGPAVVS WSWNNHWVYW AGPLVGGGLA
201: GLIYEVFFIN TTHEQLPTTD Y
Best Arabidopsis Sequence Match ( AT2G36830.1 )
(BLAST)
001: MPIRNIAIGR PDEATRPDAL KAALAEFIST LIFVVAGSGS GMAFNKLTEN GATTPSGLVA AAVAHAFGLF VAVSVGANIS GGHVNPAVTF GAFIGGNITL
101: LRGILYWIAQ LLGSVVACLI LKFATGGLAV PAFGLSAGVG VLNAFVFEIV MTFGLVYTVY ATAIDPKNGS LGTIAPIAIG FIVGANILAG GAFSGASMNP
201: AVAFGPAVVS WTWTNHWVYW AGPLVGGGIA GLIYEVFFIN TTHEQLPTTD Y
Arabidopsis Description
TIP1-1Aquaporin TIP1-1 [Source:UniProtKB/Swiss-Prot;Acc:P25818]
SUBAcon: [golgi,plasma membrane,vacuole]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.