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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • peroxisome 2
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
PProwler:secretory
PTS1:peroxisome
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX69112
CDX70995
CDX71738
CDX72515
CDX76314
CDX88803
CDX89115
CDX92368
CDY09128
CDY17511
CDY35676
CDY48920
CDY52648
CDY66912
CDY66913

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54820.1 CDX71738 AT3G61430.1 21798944
AT3G54820.1 CDX89115 AT3G61430.1 21798944
AT3G54820.1 CDY48920 AT3G61430.1 21798944
AT3G54820.1 CDY66912 AT3G61430.1 21798944
AT3G54820.1 CDY66913 AT3G61430.1 21798944
AT3G54820.1 CDX69112 AT4G35100.1 21798944
AT3G54820.1 CDX72515 AT4G35100.1 21798944
AT3G54820.1 CDX76314 AT4G35100.1 21798944
AT3G54820.1 CDY17511 AT4G35100.1 21798944
AT3G54820.1 CDY52648 AT4G35100.1 21798944
AT3G54820.1 CDX70995 AT5G22290.1 21798944
AT3G54820.1 CDX88803 AT5G22290.1 21798944
AT3G54820.1 CDX92368 AT5G22290.1 21798944
AT3G54820.1 CDY09128 AT5G22290.1 21798944
AT3G54820.1 CDY35676 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra007100.1-P Field mustard plasma membrane 100.0 100.0
CDX73446 Canola peroxisome 99.65 99.65
CDX67611 Canola plasma membrane 95.8 95.8
CDY07519 Canola plasma membrane 95.45 95.45
AT3G54820.1 Thale cress plasma membrane 94.76 94.76
CDY70391 Canola extracellular, golgi 46.15 83.02
VIT_08s0040g01890.t01 Wine grape plasma membrane 79.02 78.75
TraesCS2A01G198500.1 Wheat plasma membrane 79.72 78.62
CDY56697 Canola plasma membrane 78.67 78.4
CDX78177 Canola plasma membrane 78.67 78.4
TraesCS2D01G206300.1 Wheat golgi 79.37 78.28
TraesCS2B01G225900.1 Wheat golgi 79.37 78.28
CDX91340 Canola plasma membrane 77.97 78.25
EER98451 Sorghum plasma membrane 79.02 77.93
CDY46758 Canola plasma membrane 76.92 77.74
CDY13298 Canola plasma membrane 77.97 77.7
Os07t0448800-01 Rice plasma membrane 78.67 77.59
Zm00001d019563_P006 Maize plasma membrane 78.67 77.59
CDY46759 Canola plasma membrane 77.27 77.54
CDX91341 Canola plasma membrane 77.27 77.54
CDX74983 Canola cytosol, peroxisome, plasma membrane 52.8 76.65
Zm00001d005421_P001 Maize plasma membrane 77.97 76.37
CDX71032 Canola plasma membrane 68.88 75.77
CDY52648 Canola plasma membrane 74.13 75.44
CDX69112 Canola plasma membrane 74.13 75.44
CDY07681 Canola plasma membrane 75.87 75.35
CDY09192 Canola plasma membrane 68.18 75.29
CDX76314 Canola cytosol 73.78 75.09
CDX88767 Canola plasma membrane 68.18 75.0
CDY14415 Canola cytosol, peroxisome, plasma membrane 75.52 75.0
CDY66912 Canola extracellular 53.85 74.76
CDY17511 Canola plasma membrane 73.43 74.73
CDY31523 Canola plasma membrane 67.83 74.62
CDY53629 Canola cytosol 66.78 73.75
CDX72515 Canola golgi, plasma membrane 65.38 73.62
CDX89115 Canola plasma membrane 56.64 72.0
CDX74984 Canola cytosol, peroxisome, plasma membrane 77.97 71.94
CDY07221 Canola cytosol, peroxisome, plasma membrane 68.18 68.18
CDY38017 Canola plasma membrane 68.18 68.18
CDY51161 Canola cytosol, peroxisome, plasma membrane 68.18 68.18
CDX74334 Canola cytosol, peroxisome, plasma membrane 68.53 68.06
CDX90046 Canola cytosol, peroxisome, plasma membrane 67.83 67.83
CDX91911 Canola cytosol, peroxisome, plasma membrane 68.18 67.71
CDY10936 Canola plasma membrane 67.83 67.6
CDY27346 Canola cytosol, peroxisome, plasma membrane 67.48 67.48
CDY37078 Canola cytosol, peroxisome, plasma membrane 67.48 67.48
CDX74777 Canola cytosol, peroxisome, plasma membrane 67.48 67.48
CDX83385 Canola cytosol, peroxisome, plasma membrane 67.48 67.48
CDY18886 Canola cytosol, peroxisome, plasma membrane 67.48 67.48
CDX94185 Canola plasma membrane 67.48 67.25
CDX95670 Canola cytosol, peroxisome, plasma membrane 67.13 67.13
HORVU2Hr1G038740.1 Barley golgi, mitochondrion, plasma membrane 79.72 66.86
CDX71738 Canola plasma membrane 66.78 66.78
CDY48920 Canola plasma membrane 66.43 66.43
CDY15165 Canola plastid 68.18 60.19
CDY30146 Canola endoplasmic reticulum, extracellular, plasma membrane 32.87 37.9
CDX97733 Canola endoplasmic reticulum, extracellular 32.87 37.9
CDY63821 Canola endoplasmic reticulum, plasma membrane, vacuole 32.52 37.35
CDY20190 Canola endoplasmic reticulum, plasma membrane, vacuole 32.52 37.35
CDX82410 Canola plasma membrane 32.17 36.95
CDY69446 Canola cytosol 31.47 35.71
CDY07142 Canola cytosol 31.47 35.71
CDY13639 Canola plasma membrane 31.47 35.57
CDX83623 Canola golgi, plasma membrane, plastid 31.47 35.57
CDY59296 Canola endoplasmic reticulum, plasma membrane, vacuole 31.12 35.46
CDY67380 Canola plastid 27.27 35.29
CDY66645 Canola plastid 27.27 35.29
CDX77768 Canola endoplasmic reticulum, plasma membrane, vacuole 30.77 35.06
CDY48983 Canola plasma membrane 30.77 34.78
CDY47816 Canola endoplasmic reticulum, plasma membrane, vacuole 30.77 34.78
CDY28539 Canola plasma membrane 30.77 34.78
CDY28932 Canola endoplasmic reticulum, extracellular, vacuole 25.52 34.76
CDY51678 Canola plasma membrane, vacuole 30.07 34.4
CDY64499 Canola endoplasmic reticulum, plasma membrane, vacuole 30.07 34.4
CDY65121 Canola endoplasmic reticulum, plasma membrane, vacuole 30.07 34.4
CDY53270 Canola plasma membrane 30.07 34.26
CDX77009 Canola cytosol, plasma membrane, vacuole 29.02 33.33
CDX75873 Canola extracellular, golgi, vacuole 31.82 33.09
CDY35336 Canola extracellular 16.43 32.87
CDY66321 Canola plasma membrane 30.42 32.71
CDX96453 Canola cytosol 29.72 32.08
CDY48045 Canola golgi, mitochondrion, plasma membrane 29.72 31.95
CDX72962 Canola plasma membrane 29.37 31.7
CDX68239 Canola cytosol 28.67 30.94
CDY11123 Canola cytosol 28.67 30.94
CDY26214 Canola plasma membrane 28.67 30.71
CDY19176 Canola plasma membrane 28.67 30.71
CDY66913 Canola cytosol, mitochondrion, nucleus 4.9 30.43
CDY21731 Canola golgi, mitochondrion, plasma membrane 27.62 29.59
CDX81850 Canola golgi, mitochondrion, plasma membrane 27.62 29.59
CDX99048 Canola mitochondrion, plastid 25.17 27.91
CDY47413 Canola mitochondrion, plastid 24.83 27.52
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2GO:A0A078CMZ6InterPro:Aquaporin-likeInterPro:Aquaporin_transptrEnsemblPlants:CDX78265
ProteinID:CDX78265ProteinID:CDX78265.1GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810
GO:GO:0008150GO:GO:0015267GO:GO:0016020GO:GO:0055085EnsemblPlantsGene:GSBRNA2T00129604001InterPro:IPR023271
InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139
PANTHER:PTHR19139:SF167SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0001B380E5SEG:seg
Description
BnaA09g34600D
Coordinates
chrLK031814:+:2082847..2085573
Molecular Weight (calculated)
30476.1 Da
IEP (calculated)
9.032
GRAVY (calculated)
0.484
Length
286 amino acids
Sequence
(BLAST)
001: MTKEVVGEKG SFSGKDYQDP PPEPLFDATE LGKWSFYRAL IAEFIATLLF LYVTVMTVIG YKSQTDPALN PDQCAGVGVL GIAWAFGGMI FILVYCTAGI
101: SGGHINPAVT FGLLLARKVT LLRAVMYMVA QCLGAICGVA LVKSFQSSYY TRYGGGANGL SNGYSVGTGV AAEIIGTFVL VYTVFSATDP KRSARDSHVP
201: VLAPLPIGFA VFIVHLATIP ITGTGINPAR SLGAAIIYNK DQAWDHHWIF WAGPFAGAAI AAFYHQFVLR AGAVKALGSF RSQSRV
Best Arabidopsis Sequence Match ( AT3G54820.1 )
(BLAST)
001: MTKEVVGDKR SFSGKDYQDP PPEPLFDATE LGKWSFYRAL IAEFIATLLF LYVTIMTVIG YKSQTDPALN PDQCTGVGVL GIAWAFGGMI FILVYCTAGI
101: SGGHINPAVT FGLLLARKVT LVRAVMYMVA QCLGAICGVA LVKAFQSAYF TRYGGGANGL SDGYSIGTGV AAEIIGTFVL VYTVFSATDP KRSARDSHVP
201: VLAPLPIGFA VFIVHLATIP ITGTGINPAR SLGAAIIYNK DKAWDHHWIF WVGPFAGAAI AAFYHQFVLR AGAIKALGSF RSQPHV
Arabidopsis Description
PIP2-5Probable aquaporin PIP2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV31]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.