Factsheet for VIT_08s0040g01890.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 1
plastid 1
peroxisome 2
plasma membrane 4
extracellular 1
golgi 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	nucleus, peroxisome, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
PProwler:	secretory
PTS1:	peroxisome
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0038g02520.t01
VIT_06s0080g00970.t01
VIT_13s0067g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G54820.1	VIT_13s0067g00220.t01	AT1G01620.1	21798944
AT3G54820.1	VIT_03s0038g02520.t01	AT2G16850.1	21798944
AT3G54820.1	VIT_13s0067g00220.t01	AT3G61430.1	21798944
AT3G54820.1	VIT_13s0067g00220.t01	AT4G00430.1	21798944
AT3G54820.1	VIT_03s0038g02520.t01	AT4G35100.1	21798944
AT3G54820.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_13s0019g04280.t01	Wine grape	plasma membrane	82.58	83.45
VIT_06s0004g02850.t01	Wine grape	plasma membrane	79.79	81.79
CDX67611	Canola	plasma membrane	79.79	80.07
CDY07519	Canola	plasma membrane	79.79	80.07
TraesCS2A01G198500.1	Wheat	plasma membrane	80.84	80.0
TraesCS2B01G225900.1	Wheat	golgi	80.49	79.66
TraesCS2D01G206300.1	Wheat	golgi	80.49	79.66
Os07t0448800-01	Rice	plasma membrane	80.14	79.31
Bra003196.1-P	Field mustard	plasma membrane	78.75	79.02
Bra007100.1-P	Field mustard	plasma membrane	78.75	79.02
CDX78265	Canola	plasma membrane	78.75	79.02
EER98451	Sorghum	plasma membrane	79.79	78.97
CDX73446	Canola	peroxisome	78.4	78.67
Zm00001d019563_P006	Maize	plasma membrane	79.44	78.62
AT3G54820.1	Thale cress	plasma membrane	78.05	78.32
Zm00001d005421_P001	Maize	plasma membrane	79.09	77.74
VIT_03s0038g02520.t01	Wine grape	plasma membrane	73.87	75.99
HORVU2Hr1G038740.1	Barley	golgi, mitochondrion, plasma membrane	81.18	68.33
VIT_13s0067g00220.t01	Wine grape	plasma membrane	67.6	67.83
VIT_15s0046g02420.t01	Wine grape	peroxisome	67.25	67.48
VIT_02s0025g03390.t01	Wine grape	peroxisome	65.85	65.85
VIT_15s0046g02410.t01	Wine grape	plasma membrane	64.46	64.69
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	24.39	49.65
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	19.51	47.06
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	32.06	36.8
VIT_13s0019g00330.t01	Wine grape	cytosol, plasma membrane, vacuole	31.71	36.26
VIT_00s2783g00010.t01	Wine grape	extracellular	15.33	35.48
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	30.66	35.34
VIT_08s0007g04780.t01	Wine grape	cytosol	29.97	34.26
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	31.71	33.96
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	29.62	33.86
VIT_16s0039g00220.t01	Wine grape	cytosol	28.92	32.05
VIT_16s0022g00330.t01	Wine grape	cytosol, extracellular, plasma membrane, plastid	26.83	30.92
VIT_15s0021g02420.t01	Wine grape	extracellular	24.04	27.49
VIT_04s0008g03550.t01	Wine grape	plasma membrane	28.22	26.91

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100233094	wikigene:100233094	MapMan:24.3.1.2	UniProt:A3FA68	ProteinID:ABH09328
ProteinID:ABH09328.1	ProteinID:ABN14352	ProteinID:ABN14352.1	EMBL:AM469487	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr
ProteinID:CAN77241	ProteinID:CAN77241.1	ProteinID:CCB57071	ProteinID:CCB57071.1	EMBL:DQ834700	EMBL:EF364437
EMBL:FN596008	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886
GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267
GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	EMBL:KJ697716
InterPro:MIP	InterPro:MIP_CS	RefSeq:NP_001268058.1	PFAM:PF00230	EntrezGene:PIP2;3	wikigene:PIP2;3
PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF260	SUPFAM:SSF81338	TIGR:TC60678
TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0000F1D0FC	ArrayExpress:VIT_08s0040g01890	EnsemblPlantsGene:VIT_08s0040g01890	EnsemblPlants:VIT_08s0040g01890.t01
SEG:seg	:	:	:	:	:

Description

Aquaporin PIP23 [Source:UniProtKB/TrEMBL;Acc:A3FA68]

Coordinates

chr8:+:12986520..12988082

Molecular Weight (calculated)

30695.4 Da

IEP (calculated)

7.613

GRAVY (calculated)

0.507

Length

287 amino acids

Sequence
(BLAST)

001: MAKDIEVAGH GDLTLKDYHD PPPAPLVDPE ELGSWSFYRA IIAEFVATLL FLYVTVLTVI GYKNQTDPYH HGNECNGVGI LGIAWAFGGM IFILVYCTAG
101: ISGGHINPAV TFGLFLARKV SLVRAVMYMV AQCGGAICGC GLVKLFQDIY YIRYGGGANE LASGYSIGTG LAAEIIGTFV LVYTVFSATD PKRNARDSHV
201: PVLAPLPIGF AVFMVHLATI PITGTGINPA RSLGAAVIYN QPKAWSDHWV FWAGPFIGAA IAAFYHQFIL RAGAVKALGS FKSSSHM

Best Arabidopsis Sequence Match ( AT3G54820.1 )
(BLAST)

001: MTKEVVGDKR SFSGKDYQDP PPEPLFDATE LGKWSFYRAL IAEFIATLLF LYVTIMTVIG YKSQTDPALN PDQCTGVGVL GIAWAFGGMI FILVYCTAGI
101: SGGHINPAVT FGLLLARKVT LVRAVMYMVA QCLGAICGVA LVKAFQSAYF TRYGGGANGL SDGYSIGTGV AAEIIGTFVL VYTVFSATDP KRSARDSHVP
201: VLAPLPIGFA VFIVHLATIP ITGTGINPAR SLGAAIIYNK DKAWDHHWIF WVGPFAGAAI AAFYHQFVLR AGAIKALGSF RSQPHV

Arabidopsis Description

PIP2-5Probable aquaporin PIP2-5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SV31]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.