Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 4
- vacuole 6
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 | |
| VIT_09s0002g03770.t01 | |
| VIT_15s0048g00220.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G17340.1 | VIT_09s0002g03770.t01 | AT3G16310.1 | 21798944 |
| AT4G17340.1 | VIT_15s0048g00220.t01 | AT3G60600.1 | 21798944 |
| AT4G17340.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_00s2783g00010.t01 | Wine grape | extracellular | 48.4 | 97.58 |
| Bra026245.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 84.0 | 84.0 |
| AT4G17340.1 | Thale cress | golgi, plasma membrane, vacuole | 84.0 | 84.0 |
| CDY65121 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 84.0 | 84.0 |
| CDY64499 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 83.2 | 83.2 |
| PGSC0003DMT400030994 | Potato | endoplasmic reticulum, plasma membrane, vacuole | 82.4 | 82.4 |
| TraesCS6D01G232100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.6 | 81.93 |
| TraesCS6A01G250300.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 81.6 | 81.93 |
| GSMUA_Achr11P... | Banana | endoplasmic reticulum, plasma membrane | 81.6 | 81.93 |
| GSMUA_Achr11P... | Banana | extracellular, plasma membrane | 81.6 | 81.93 |
| AT5G47450.1 | Thale cress | golgi, plasma membrane | 81.6 | 81.6 |
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 81.6 | 81.6 |
| HORVU6Hr1G062980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 81.2 | 81.53 |
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 81.2 | 81.53 |
| TraesCS6B01G275100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 80.8 | 81.12 |
| CDY51678 | Canola | plasma membrane, vacuole | 80.8 | 80.8 |
| Zm00001d002738_P001 | Maize | plasma membrane | 80.0 | 80.65 |
| Os02t0658100-01 | Rice | vacuole | 66.0 | 80.1 |
| EES12617 | Sorghum | plasma membrane | 79.6 | 79.92 |
| KXG31086 | Sorghum | golgi, plasma membrane, vacuole | 79.2 | 79.52 |
| Zm00001d051362_P001 | Maize | plasma membrane | 79.2 | 79.52 |
| Zm00001d026177_P001 | Maize | extracellular | 78.8 | 79.44 |
| Bra022131.1-P | Field mustard | extracellular | 64.8 | 79.41 |
| CDY28932 | Canola | endoplasmic reticulum, extracellular, vacuole | 66.0 | 78.57 |
| CDX77768 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 78.8 | 78.49 |
| CDY59296 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 78.4 | 78.09 |
| Bra024943.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 78.0 | 77.69 |
| Zm00001d017485_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 77.6 | 77.6 |
| TraesCS2B01G433200.1 | Wheat | plasma membrane | 76.8 | 77.42 |
| TraesCS2D01G411400.1 | Wheat | plasma membrane | 76.8 | 77.42 |
| TraesCS2A01G414100.1 | Wheat | plasma membrane | 76.4 | 77.02 |
| Os04t0550900-00 | Rice | endoplasmic reticulum, extracellular, vacuole | 41.2 | 72.54 |
| VIT_09s0002g04020.t01 | Wine grape | plasma membrane, vacuole | 72.0 | 72.29 |
| VIT_08s0007g04780.t01 | Wine grape | cytosol | 60.0 | 59.76 |
| VIT_13s0019g00330.t01 | Wine grape | cytosol, plasma membrane, vacuole | 59.2 | 58.96 |
| VIT_06s0061g00730.t01 | Wine grape | cytosol, plasma membrane, vacuole | 56.8 | 56.57 |
| VIT_06s0004g04120.t01 | Wine grape | cytosol, plasma membrane, vacuole | 58.4 | 54.48 |
| VIT_16s0022g00330.t01 | Wine grape | cytosol, extracellular, plasma membrane, plastid | 52.8 | 53.01 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 53.6 | 51.74 |
| VIT_15s0021g02420.t01 | Wine grape | extracellular | 49.6 | 49.4 |
| VIT_04s0008g03550.t01 | Wine grape | plasma membrane | 50.0 | 41.53 |
| VIT_03s0038g02520.t01 | Wine grape | plasma membrane | 37.6 | 33.69 |
| VIT_18s0001g06480.t01 | Wine grape | cytosol, extracellular, vacuole | 18.8 | 33.33 |
| VIT_06s0004g02850.t01 | Wine grape | plasma membrane | 36.8 | 32.86 |
| VIT_12s0034g00250.t01 | Wine grape | cytosol, extracellular, plastid | 15.6 | 32.77 |
| VIT_08s0040g01890.t01 | Wine grape | plasma membrane | 36.8 | 32.06 |
| VIT_13s0019g04280.t01 | Wine grape | plasma membrane | 35.6 | 31.34 |
| VIT_15s0046g02420.t01 | Wine grape | peroxisome | 35.6 | 31.12 |
| VIT_15s0046g02410.t01 | Wine grape | plasma membrane | 35.2 | 30.77 |
| VIT_02s0025g03390.t01 | Wine grape | peroxisome | 34.8 | 30.31 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 34.4 | 30.07 |
Protein Annotations
| Gene3D:1.20.1080.10 | EntrezGene:100258739 | wikigene:100258739 | MapMan:24.3.1.3 | UniProt:A5BFY1 | EMBL:AM458201 |
| InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | ProteinID:CAN76842 | ProteinID:CAN76842.1 | ProteinID:CCB60307 | ProteinID:CCB60307.1 |
| EMBL:FN596504 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 |
| GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 | InterPro:IPR023271 | EntrezGene:LOC100258739 | wikigene:LOC100258739 |
| InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 | PANTHER:PTHR19139 |
| PANTHER:PTHR19139:SF257 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0001520E1F | ArrayExpress:VIT_00s0229g00130 |
| EnsemblPlantsGene:VIT_00s0229g00130 | EnsemblPlants:VIT_00s0229g00130.t01 | unigene:Vvi.24103 | RefSeq:XP_002277904 | RefSeq:XP_002277904.2 | SEG:seg |
Description
No Description!
Coordinates
chrUn:+:15488900..15490718
Molecular Weight (calculated)
25319.9 Da
IEP (calculated)
4.754
GRAVY (calculated)
0.931
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLAFGSFG DSFSVGSLKA YLSEFNATLL FVFAGVGSAI AYGKLTSDAA LDPPGLVAVA IAHAFALFVG VSIAANISGG HLNPAVTFGL AIGGHITILT
101: GIFYVIAQCL GSIVACLLLK FATNGESIPT HGVAAGMNAI EGVVMEIVIT FALVYTVYAT AVDPKKGSLG IIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSENWIYWVG PLVGGGLAGL VYGNIFIESY ASVPISDEYA
101: GIFYVIAQCL GSIVACLLLK FATNGESIPT HGVAAGMNAI EGVVMEIVIT FALVYTVYAT AVDPKKGSLG IIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD FSENWIYWVG PLVGGGLAGL VYGNIFIESY ASVPISDEYA
001: MVKIEVGSVG DSFSVSSLKA YLSEFIATLL FVFAGVGSAV AFAKLTSDGA LDPAGLVAIA IAHAFALFVG VSIAANISGG HLNPAVTLGL AIGGNITLIT
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
101: GFFYWIAQCL GSIVACLLLV FVTNGKSVPT HGVSAGLGAV EGVVMEIVVT FALVYTVYAT AADPKKGSLG TIAPIAIGFI VGANILAAGP FSGGSMNPAR
201: SFGPAVVSGD LSQIWIYWVG PLVGGALAGL IYGDVFIGSY EAVETREIRV
Arabidopsis Description
TIP2-3Aquaporin TIP2-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGL2]
SUBAcon: [plasma membrane,golgi]
SUBAcon: [plasma membrane,golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.