Factsheet for VIT_03s0038g02520.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0010g03800.t01
VIT_03s0038g02520.t01
VIT_06s0080g00970.t01
VIT_10s0003g01830.t01
VIT_13s0067g00220.t01
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G16850.1	VIT_13s0067g00220.t01	AT1G01620.1	21798944
AT2G16850.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT2G16850.1	VIT_13s0067g00220.t01	AT4G00430.1	21798944
AT2G16850.1	VIT_10s0003g01830.t01	AT4G19030.1	21798944
AT2G16850.1	VIT_13s0067g00220.t01	AT4G23400.1	21798944
AT2G16850.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944
AT4G35100.1	VIT_13s0067g00220.t01	AT1G01620.1	21798944
AT4G35100.1	VIT_01s0010g03800.t01	AT1G27300.1	21798944
AT4G35100.1	VIT_03s0038g02520.t01	AT2G16850.1	21798944
AT4G35100.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944
AT4G35100.1	VIT_13s0067g00220.t01	AT3G61430.1	21798944
AT4G35100.1	VIT_13s0067g00220.t01	AT4G00430.1	21798944
AT4G35100.1	VIT_13s0067g00220.t01	AT4G23400.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60692	Soybean	mitochondrion	91.76	93.09
GSMUA_Achr5P11480_001	Banana	plasma membrane	65.59	92.42
AT2G16850.1	Thale cress	plasma membrane	90.68	91.01
KRH51390	Soybean	plasma membrane	89.61	89.93
AT4G35100.1	Thale cress	plasma membrane	89.61	89.29
CDX69112	Canola	plasma membrane	89.25	88.61
CDY52648	Canola	plasma membrane	88.89	88.26
Bra011585.1-P	Field mustard	plasma membrane	88.89	88.26
Bra017697.1-P	Field mustard	cytosol	88.53	87.9
CDX76314	Canola	cytosol	88.17	87.54
CDY17511	Canola	plasma membrane	88.17	87.54
Bra034675.1-P	Field mustard	cytosol, peroxisome, plasma membrane	87.81	87.19
KRH16406	Soybean	extracellular	47.67	86.93
Solyc01g111660.2.1	Tomato	nucleus	87.46	86.22
GSMUA_Achr2P11190_001	Banana	plasma membrane	86.38	85.77
PGSC0003DMT400015824	Potato	plasma membrane	86.38	85.16
CDX72515	Canola	golgi, plasma membrane	77.42	85.04
Solyc10g055630.1.1	Tomato	nucleus, plastid	86.02	84.81
PGSC0003DMT400068708	Potato	plasma membrane	85.66	84.45
Os04t0233400-01	Rice	plasma membrane	84.95	84.04
GSMUA_Achr1P02360_001	Banana	unclear	84.95	84.04
VIT_06s0004g02850.t01	Wine grape	plasma membrane	83.15	82.86
VIT_13s0019g04280.t01	Wine grape	plasma membrane	82.44	80.99
TraesCS2D01G063900.1	Wheat	plasma membrane	81.72	80.28
PGSC0003DMT400009240	Potato	cytosol, extracellular, plasma membrane	72.04	80.08
TraesCS2A01G065700.1	Wheat	golgi	81.36	79.93
TraesCS2B01G077700.1	Wheat	plasma membrane	81.36	79.93
Solyc02g083510.2.1	Tomato	nucleus	73.12	78.76
GSMUA_Achr1P07460_001	Banana	extracellular	46.59	74.29
VIT_08s0040g01890.t01	Wine grape	plasma membrane	75.99	73.87
GSMUA_Achr1P26380_001	Banana	plasma membrane	72.04	71.53
VIT_13s0067g00220.t01	Wine grape	plasma membrane	70.25	68.53
VIT_15s0046g02420.t01	Wine grape	peroxisome	68.82	67.13
VIT_02s0025g03390.t01	Wine grape	peroxisome	68.46	66.55
VIT_15s0046g02410.t01	Wine grape	plasma membrane	65.59	63.99
HORVU2Hr1G010990.2	Barley	plasma membrane	71.33	62.58
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	24.73	48.94
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	20.07	47.06
VIT_00s2783g00010.t01	Wine grape	extracellular	16.85	37.9
VIT_00s0229g00130.t01	Wine grape	endoplasmic reticulum, plasma membrane, vacuole	33.69	37.6
VIT_09s0002g04020.t01	Wine grape	plasma membrane, vacuole	31.9	35.74
VIT_16s0039g00220.t01	Wine grape	cytosol	31.54	33.98
VIT_13s0019g00330.t01	Wine grape	cytosol, plasma membrane, vacuole	29.75	33.07
VIT_08s0007g04780.t01	Wine grape	cytosol	29.39	32.67
VIT_06s0004g04120.t01	Wine grape	cytosol, plasma membrane, vacuole	30.47	31.72
VIT_16s0022g00330.t01	Wine grape	cytosol, extracellular, plasma membrane, plastid	27.96	31.33
VIT_06s0061g00730.t01	Wine grape	cytosol, plasma membrane, vacuole	27.96	31.08
VIT_15s0021g02420.t01	Wine grape	extracellular	24.01	26.69
VIT_04s0008g03550.t01	Wine grape	plasma membrane	27.6	25.58

Protein Annotations

Gene3D:1.20.1080.10	EntrezGene:100233027	wikigene:100233027	MapMan:24.3.1.2	ProteinID:ABH09327	ProteinID:ABH09327.1
ProteinID:ABN14351	ProteinID:ABN14351.1	ProteinID:AEZ35023	ProteinID:AEZ35023.1	EMBL:AM473895	InterPro:Aquaporin-like
InterPro:Aquaporin_transptr	ProteinID:CAN77349	ProteinID:CAN77349.1	ProteinID:CCB60614	ProteinID:CCB60614.1	EMBL:DQ834699
EMBL:EF364436	UniProt:F6I0Z8	EMBL:FN596508	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810	GO:GO:0006833	GO:GO:0008150
GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021	GO:GO:0034220	GO:GO:0055085
EMBL:HQ913642	InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	RefSeq:NP_001267957.1	PFAM:PF00230
EntrezGene:PIP2;2	wikigene:PIP2;2	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196
SUPFAM:SSF81338	TIGR:TC52274	TIGR:TC63132	TIGR:TC68434	TIGRFAMs:TIGR00861	TMHMM:TMhelix
UniParc:UPI00015C839E	ArrayExpress:VIT_03s0038g02520	EnsemblPlantsGene:VIT_03s0038g02520	EnsemblPlants:VIT_03s0038g02520.t01	unigene:Vvi.9151	:

Description

Plasma membrane 22 aquaporin [Source:UniProtKB/TrEMBL;Acc:F6I0Z8]

Coordinates

chr3:+:1760984..1762467

Molecular Weight (calculated)

29622.2 Da

IEP (calculated)

9.042

GRAVY (calculated)

0.556

Length

279 amino acids

Sequence
(BLAST)

001: MSKEVSEEGQ SHGKDYVDPP PAPLIDIAEI KLWSFYRAVI AEFIATLLFL YITVATVIGY KKQSDPCGGV GLLGIAWAFG GMIFILVYCT AGISGGHINP
101: AVTFGLFLAR KVSLIRALAY MVAQCLGAIC GVGLVKAFMK SFYNSLGGGA NSVAAGYNKG TALGAEIIGT FVLVYTVFSA TDPKRSARDS HVPVLAPLPI
201: GFAVFMVHLA TIPITGTGIN PARSFGAAVI YNNEKVWDDQ WIFWVGPFVG ALAAAAYHQY ILRAAAIKAL GSFRSNPTN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.