Factsheet for Solyc10g055630.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 2
cytosol 1
plasma membrane 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, peroxisome, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plastid: 26371478
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068708	Potato	plasma membrane	97.53	97.53
Solyc01g111660.2.1	Tomato	nucleus	88.69	88.69
VIT_03s0038g02520.t01	Wine grape	plasma membrane	84.81	86.02
GSMUA_Achr5P11480_001	Banana	plasma membrane	58.66	83.84
GSMUA_Achr2P11190_001	Banana	plasma membrane	81.98	82.56
GSMUA_Achr1P02360_001	Banana	unclear	80.21	80.5
Os04t0233400-01	Rice	plasma membrane	78.8	79.08
Solyc09g007770.2.1	Tomato	nucleus	72.08	78.76
Solyc10g084120.1.1	Tomato	nucleus	78.09	78.65
Solyc02g083510.2.1	Tomato	nucleus	71.02	77.61
TraesCS2B01G077700.1	Wheat	plasma membrane	76.68	76.41
Solyc06g011350.2.1	Tomato	nucleus	75.27	76.07
TraesCS2A01G065700.1	Wheat	golgi	76.33	76.06
TraesCS2D01G063900.1	Wheat	plasma membrane	76.33	76.06
Solyc11g069430.1.1	Tomato	plastid	75.97	74.91
Solyc09g007760.2.1	Tomato	extracellular	77.03	71.24
GSMUA_Achr1P07460_001	Banana	extracellular	43.46	70.29
GSMUA_Achr1P26380_001	Banana	plasma membrane	68.55	69.04
Solyc03g096290.2.1	Tomato	nucleus	67.84	67.13
Solyc08g081190.2.1	Tomato	plastid	66.78	66.08
Solyc08g008050.2.1	Tomato	peroxisome	66.43	65.51
Solyc12g056220.1.1	Tomato	plastid	66.43	65.28
Solyc01g094690.2.1	Tomato	nucleus	65.72	65.26
HORVU2Hr1G010990.2	Barley	plasma membrane	68.55	61.01
Solyc05g055990.2.1	Tomato	nucleus, plasma membrane	58.3	57.09
Solyc12g044330.1.1	Tomato	plastid	34.28	39.11
Solyc06g060760.2.1	Tomato	endoplasmic reticulum	31.8	36.0
Solyc10g083880.1.1	Tomato	plastid	31.1	35.48
Solyc06g074820.2.1	Tomato	plastid	30.74	34.8
Solyc06g075650.2.1	Tomato	endoplasmic reticulum	30.74	34.39
Solyc06g066560.1.1	Tomato	mitochondrion	32.86	34.07
Solyc06g072130.2.1	Tomato	extracellular	30.04	32.82
Solyc08g066840.2.1	Tomato	endoplasmic reticulum, plasma membrane	28.27	32.39
Solyc03g019820.2.1	Tomato	cytosol, golgi, plasma membrane	26.86	29.23
Solyc03g093230.2.1	Tomato	plastid	25.09	28.29

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	EMBL:AB845614	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0005623	GO:GO:0005886	GO:GO:0005887	GO:GO:0006810
GO:GO:0006833	GO:GO:0008150	GO:GO:0015250	GO:GO:0015267	GO:GO:0016020	GO:GO:0016021
GO:GO:0034220	GO:GO:0055085	InterPro:IPR023271	UniProt:K4D1F3	InterPro:MIP	InterPro:MIP_CS
PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221	PANTHER:PTHR19139	PANTHER:PTHR19139:SF196	SUPFAM:SSF81338
EnsemblPlantsGene:Solyc10g055630.1	EnsemblPlants:Solyc10g055630.1.1	TIGRFAMs:TIGR00861	TMHMM:TMhelix	UniParc:UPI0001B34C1A	:

Description

Plasmamembrane intrinsic protein 29 [Source:UniProtKB/TrEMBL;Acc:K4D1F3]

Coordinates

chr10:+:57108314..57109721

Molecular Weight (calculated)

30357.1 Da

IEP (calculated)

8.444

GRAVY (calculated)

0.476

Length

283 amino acids

Sequence
(BLAST)

001: MSKDVIEEGQ AHHHGKDYVD PPPAPLLDMA ELTKWSFYRA LIAEFIATLL FLYVTVATVI GHKKLNALDQ CDGVGILGIA WAFGGMIFVL VYCTAGISGG
101: HINPAVTFGL FLARKVSLIR AVAYIIAQSL GAICGVGFVK AFMKHYYNTE GGGANFVQPG YNNGTALGAE IIGTFVLVYT VFSATDPKRS ARDSHVPVLA
201: PLPIGFAVFM VHLATIPITG TGINPARSFG AAVIYGNEKI WDDQWIFWVG PMVGAMAAAI YHQFILRAGA VKALGSFRSN QTN

Best Arabidopsis Sequence Match ( AT4G35100.2 )
(BLAST)

001: MSKEVSEEGK THHGKDYVDP PPAPLLDMGE LKSWSFYRAL IAEFIATLLF LYVTVATVIG HKKQTGPCDG VGLLGIAWAF GGMIFVLVYC TAGISGGHIN
101: PAVTFGLFLA RKVSLVRALG YMIAQCLGAI CGVGFVKAFM KTPYNTLGGG ANTVADGYSK GTALGAEIIG TFVLVYTVFS ATDPKRSARD SHIPVLAPLP
201: IGFAVFMVHL ATIPITGTGI NPARSFGAAV IYNNEKAWDD QWIFWVGPFL GALAAAAYHQ YILRASAIKA LGSFRSNATN

Arabidopsis Description

PIP2-7Aquaporin PIP2-7 [Source:UniProtKB/Swiss-Prot;Acc:P93004]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.