Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 1
- vacuole 3
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
29876421
|
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400069330 | Potato | cytosol | 98.07 | 98.07 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 81.47 | 81.15 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 72.97 | 72.97 |
| CDY66321 | Canola | plasma membrane | 72.59 | 70.68 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 69.5 | 70.59 |
| Bra008079.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 71.81 | 69.92 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 71.81 | 69.92 |
| KRH38823 | Soybean | nucleus | 68.73 | 69.8 |
| AT1G73190.1 | Thale cress | plasma membrane | 72.2 | 69.78 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 71.43 | 69.29 |
| Bra016014.1-P | Field mustard | cytosol | 70.66 | 69.06 |
| CDX72962 | Canola | plasma membrane | 70.66 | 69.06 |
| CDY11123 | Canola | cytosol | 70.27 | 68.68 |
| CDX96453 | Canola | cytosol | 70.27 | 68.68 |
| CDX68239 | Canola | cytosol | 70.27 | 68.68 |
| GSMUA_Achr4P26010_001 | Banana | cytosol, golgi, plasma membrane | 67.18 | 68.5 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 70.27 | 68.16 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 69.88 | 67.79 |
| Bra031005.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 69.88 | 67.79 |
| GSMUA_Achr2P10640_001 | Banana | cytosol, golgi, plasma membrane | 66.41 | 67.72 |
| KRH34280 | Soybean | endoplasmic reticulum | 66.02 | 67.32 |
| Bra025947.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.73 | 66.67 |
| KRG92517 | Soybean | cytosol | 65.25 | 66.54 |
| CDY19176 | Canola | plasma membrane | 68.34 | 66.29 |
| CDY26214 | Canola | plasma membrane | 68.34 | 66.29 |
| Zm00001d032610_P003 | Maize | mitochondrion, plastid | 65.25 | 63.53 |
| Zm00001d013956_P003 | Maize | plasma membrane | 63.71 | 62.98 |
| Solyc10g083880.1.1 | Tomato | plastid | 59.07 | 61.69 |
| EER94020 | Sorghum | golgi, mitochondrion, plasma membrane | 63.32 | 61.65 |
| Os10t0492600-01 | Rice | plastid | 61.78 | 60.61 |
| HORVU1Hr1G043890.2 | Barley | mitochondrion | 61.0 | 60.08 |
| TraesCS1B01G182200.1 | Wheat | golgi | 60.62 | 59.7 |
| TraesCS1A01G165400.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 60.23 | 59.32 |
| TraesCS1D01G175200.1 | Wheat | unclear | 60.23 | 59.32 |
| Solyc06g075650.2.1 | Tomato | endoplasmic reticulum | 55.6 | 56.92 |
| Solyc06g074820.2.1 | Tomato | plastid | 52.51 | 54.4 |
| Os04t0527900-01 | Rice | plastid | 55.6 | 54.34 |
| Zm00001d002952_P001 | Maize | plasma membrane | 55.21 | 53.96 |
| TraesCS2D01G370800.1 | Wheat | plasma membrane | 54.44 | 53.21 |
| TraesCS2A01G374400.1 | Wheat | plasma membrane | 54.44 | 53.21 |
| Solyc06g060760.2.1 | Tomato | endoplasmic reticulum | 51.35 | 53.2 |
| TraesCS2B01G391400.1 | Wheat | extracellular, plasma membrane, vacuole | 54.05 | 52.83 |
| Solyc12g044330.1.1 | Tomato | plastid | 50.58 | 52.82 |
| EES11105 | Sorghum | mitochondrion, plasma membrane | 54.44 | 52.61 |
| Solyc06g066560.1.1 | Tomato | mitochondrion | 51.35 | 48.72 |
| Solyc08g066840.2.1 | Tomato | endoplasmic reticulum, plasma membrane | 44.4 | 46.56 |
| EER95659 | Sorghum | mitochondrion | 45.95 | 43.91 |
| Solyc03g093230.2.1 | Tomato | plastid | 42.47 | 43.82 |
| Solyc02g083510.2.1 | Tomato | nucleus | 33.98 | 33.98 |
| Solyc09g007770.2.1 | Tomato | nucleus | 33.59 | 33.59 |
| Zm00001d048520_P014 | Maize | mitochondrion | 33.98 | 32.84 |
| Solyc10g084120.1.1 | Tomato | nucleus | 33.98 | 31.32 |
| Solyc01g094690.2.1 | Tomato | nucleus | 33.98 | 30.88 |
| Solyc08g081190.2.1 | Tomato | plastid | 33.98 | 30.77 |
| Solyc01g111660.2.1 | Tomato | nucleus | 33.59 | 30.74 |
| Solyc08g008050.2.1 | Tomato | peroxisome | 33.98 | 30.66 |
| Solyc12g056220.1.1 | Tomato | plastid | 33.98 | 30.56 |
| Solyc03g096290.2.1 | Tomato | nucleus | 33.59 | 30.42 |
| Solyc06g011350.2.1 | Tomato | nucleus | 32.82 | 30.36 |
| Solyc10g055630.1.1 | Tomato | nucleus, plastid | 32.82 | 30.04 |
| Solyc11g069430.1.1 | Tomato | plastid | 33.2 | 29.97 |
| Solyc09g007760.2.1 | Tomato | extracellular | 33.59 | 28.43 |
| Solyc05g055990.2.1 | Tomato | nucleus, plasma membrane | 27.8 | 24.91 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 |
| GO:GO:0005887 | GO:GO:0006810 | GO:GO:0006833 | GO:GO:0008150 | GO:GO:0009705 | GO:GO:0015250 |
| GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0034220 | GO:GO:0042807 | GO:GO:0055085 |
| InterPro:IPR023271 | UniProt:K4C8T5 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 |
| ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF30 | SUPFAM:SSF81338 | EnsemblPlantsGene:Solyc06g072130.2 | EnsemblPlants:Solyc06g072130.2.1 |
| TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0001B34C0E | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6:-:44452084..44454009
Molecular Weight (calculated)
27454.3 Da
IEP (calculated)
7.318
GRAVY (calculated)
0.503
Length
259 amino acids
Sequence
(BLAST)
(BLAST)
001: MQPRRYEFGR ADEATHPDSV RATLSEFLST FIFVFAGEGS VLALDKLYPD RALGASRLTA IALAHAFSLF AAVASSMNVS GGHINPAVTF GALVGGRVSV
101: LRAMYYWIGQ LLGAVVASAL LRLATDGLRP VGFAVASGVG NGNALVMEIV MTFGLVYTVY ATAIDPKRGS LGIIAPLAIA FIVGANVLVG GPFEGASMNP
201: ARAFGPALVG WRWRNHWIYW VGPFIGAAIA GIIYEFGLIQ AHDEAPVHTH HQPLAPEDY
101: LRAMYYWIGQ LLGAVVASAL LRLATDGLRP VGFAVASGVG NGNALVMEIV MTFGLVYTVY ATAIDPKRGS LGIIAPLAIA FIVGANVLVG GPFEGASMNP
201: ARAFGPALVG WRWRNHWIYW VGPFIGAAIA GIIYEFGLIQ AHDEAPVHTH HQPLAPEDY
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAG EGSILALDKL YWDTAAHTGT NTPGGLVLVA LAHALALFAA VSAAINVSGG HVNPAVTFAA
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
101: LIGGRISVIR AIYYWVAQLI GAILACLLLR LATNGLRPVG FHVASGVSEL HGLLMEIILT FALVYVVYST AIDPKRGSIG IIAPLAIGLI VGANILVGGP
201: FDGASMNPAR AFGPALVGWR WSNHWIYWVG PFIGGALAAL IYEYMIIPSV NEPPHHSTHQ PLAPEDY
Arabidopsis Description
TIP3-2BETA-TIP [Source:UniProtKB/TrEMBL;Acc:A0A178WI57]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.