Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- vacuole 3
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- plasma membrane 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G175200.1 | Wheat | unclear | 98.86 | 98.86 |
| TraesCS1B01G182200.1 | Wheat | golgi | 98.48 | 98.48 |
| TraesCS1A01G165400.1 | Wheat | golgi, mitochondrion, plasma membrane, plastid | 98.1 | 98.1 |
| Os10t0492600-01 | Rice | plastid | 88.59 | 88.26 |
| Zm00001d013956_P003 | Maize | plasma membrane | 86.69 | 87.02 |
| EER94020 | Sorghum | golgi, mitochondrion, plasma membrane | 84.41 | 83.46 |
| Zm00001d032610_P003 | Maize | mitochondrion, plastid | 82.51 | 81.58 |
| GSMUA_Achr4P26010_001 | Banana | cytosol, golgi, plasma membrane | 74.9 | 77.56 |
| GSMUA_Achr2P10640_001 | Banana | cytosol, golgi, plasma membrane | 71.86 | 74.41 |
| VIT_16s0039g00220.t01 | Wine grape | cytosol | 63.88 | 64.86 |
| CDX72962 | Canola | plasma membrane | 65.02 | 64.53 |
| CDX96453 | Canola | cytosol | 65.02 | 64.53 |
| CDY66321 | Canola | plasma membrane | 65.02 | 64.29 |
| AT1G73190.1 | Thale cress | plasma membrane | 65.4 | 64.18 |
| Bra016014.1-P | Field mustard | cytosol | 64.64 | 64.15 |
| CDX68239 | Canola | cytosol | 64.26 | 63.77 |
| CDY11123 | Canola | cytosol | 64.26 | 63.77 |
| KRH34280 | Soybean | endoplasmic reticulum | 60.84 | 62.99 |
| CDY48045 | Canola | golgi, mitochondrion, plasma membrane | 63.5 | 62.78 |
| Bra008079.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 63.5 | 62.78 |
| KRH38823 | Soybean | nucleus | 60.46 | 62.35 |
| KRH09321 | Soybean | cytosol, mitochondrion, plasma membrane | 60.46 | 62.35 |
| KRG92517 | Soybean | cytosol | 60.08 | 62.2 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 61.98 | 61.05 |
| Solyc06g072130.2.1 | Tomato | extracellular | 60.08 | 61.0 |
| PGSC0003DMT400069330 | Potato | cytosol | 60.08 | 61.0 |
| Solyc03g019820.2.1 | Tomato | cytosol, golgi, plasma membrane | 59.7 | 60.38 |
| PGSC0003DMT400039507 | Potato | cytosol, golgi, plasma membrane | 59.7 | 60.38 |
| CDY19176 | Canola | plasma membrane | 60.84 | 59.93 |
| Bra025947.1-P | Field mustard | cytosol, golgi, plasma membrane | 60.84 | 59.93 |
| CDY26214 | Canola | plasma membrane | 60.46 | 59.55 |
| CDY21731 | Canola | golgi, mitochondrion, plasma membrane | 60.08 | 59.18 |
| Bra031005.1-P | Field mustard | golgi, mitochondrion, plasma membrane | 60.08 | 59.18 |
| CDX81850 | Canola | golgi, mitochondrion, plasma membrane | 60.08 | 59.18 |
| HORVU3Hr1G116790.2 | Barley | vacuole | 53.61 | 55.95 |
| HORVU4Hr1G079230.1 | Barley | vacuole | 52.09 | 54.8 |
| HORVU0Hr1G032130.2 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 46.39 | 49.0 |
| HORVU6Hr1G062980.1 | Barley | endoplasmic reticulum, plasma membrane, vacuole | 46.39 | 49.0 |
| HORVU7Hr1G081770.8 | Barley | plasma membrane | 45.25 | 47.79 |
| HORVU3Hr1G031620.5 | Barley | nucleus, peroxisome, plastid | 42.97 | 35.53 |
| HORVU4Hr1G085250.2 | Barley | plastid | 36.12 | 31.56 |
| HORVU0Hr1G014490.7 | Barley | plastid | 33.08 | 29.29 |
| HORVU5Hr1G125600.1 | Barley | golgi, peroxisome, plasma membrane | 32.32 | 29.21 |
| HORVU2Hr1G089940.3 | Barley | plasma membrane | 31.94 | 28.97 |
| HORVU6Hr1G014300.1 | Barley | cytosol, golgi, peroxisome | 31.56 | 28.42 |
| HORVU2Hr1G089970.3 | Barley | endoplasmic reticulum, extracellular | 9.13 | 28.24 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 29.66 | 26.9 |
| HORVU0Hr1G011280.5 | Barley | cytosol | 26.24 | 26.34 |
| HORVU2Hr1G097780.15 | Barley | golgi, mitochondrion, plastid | 26.24 | 25.65 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 30.04 | 25.4 |
| HORVU3Hr1G031680.1 | Barley | vacuole | 25.86 | 25.37 |
| HORVU6Hr1G058930.20 | Barley | golgi, plasma membrane | 27.76 | 25.26 |
| HORVU5Hr1G084230.1 | Barley | extracellular, golgi, mitochondrion | 29.66 | 25.08 |
| HORVU5Hr1G027240.4 | Barley | plasma membrane | 30.04 | 24.84 |
| HORVU5Hr1G029550.2 | Barley | plasma membrane | 30.04 | 24.84 |
| HORVU2Hr1G038740.1 | Barley | golgi, mitochondrion, plasma membrane | 31.18 | 24.05 |
| HORVU2Hr1G010990.2 | Barley | plasma membrane | 28.52 | 23.58 |
| HORVU7Hr1G038940.1 | Barley | golgi | 15.97 | 20.59 |
| HORVU2Hr1G089820.6 | Barley | golgi | 22.05 | 20.28 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.3 | EMBL:AB540228 | EMBL:AK376769 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr |
| UniProt:D2KZ45 | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 |
| GO:GO:0015267 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0055085 | EnsemblPlantsGene:HORVU1Hr1G043890 | EnsemblPlants:HORVU1Hr1G043890.2 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF132 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | UniParc:UPI0001C238B3 |
| SEG:seg | : | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:D2KZ45]
Coordinates
chrchr1H:+:319978257..319979635
Molecular Weight (calculated)
27567.7 Da
IEP (calculated)
8.791
GRAVY (calculated)
0.575
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAARSTGR RGFTMGRSED ATHPDTIRAA ISEFLATAIF VFAAEGSILS LGKLYHDMST AGGLVAVALA HALALAVAVS VAVNISGGHV NPAITFGALL
101: GGRITLVRAL FYWIAQLLGA IVASLLLRLT TGGMRPPGFS LASGVGDWHA VLLEAVMTFG LMYAYYATLI DPKRGHVGTI GPLAVGFLLG ANILAGGPFD
201: GAAMNPARVF GPALVGWRWR HHWVYWLGPF LGSGIAGLLY EYVVIPSTET AAHAHQPLAP EDY
101: GGRITLVRAL FYWIAQLLGA IVASLLLRLT TGGMRPPGFS LASGVGDWHA VLLEAVMTFG LMYAYYATLI DPKRGHVGTI GPLAVGFLLG ANILAGGPFD
201: GAAMNPARVF GPALVGWRWR HHWVYWLGPF LGSGIAGLLY EYVVIPSTET AAHAHQPLAP EDY
001: MATSARRAYG FGRADEATHP DSIRATLAEF LSTFVFVFAA EGSILSLDKL YWEHAAHAGT NTPGGLILVA LAHAFALFAA VSAAINVSGG HVNPAVTFGA
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
101: LVGGRVTAIR AIYYWIAQLL GAILACLLLR LTTNGMRPVG FRLASGVGAV NGLVLEIILT FGLVYVVYST LIDPKRGSLG IIAPLAIGLI VGANILVGGP
201: FSGASMNPAR AFGPALVGWR WHDHWIYWVG PFIGSALAAL IYEYMVIPTE PPTHHAHGVH QPLAPEDY
Arabidopsis Description
TIP3-1Aquaporin TIP3-1 [Source:UniProtKB/Swiss-Prot;Acc:P26587]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.