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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:
  • nucleus 1
  • plastid 1
  • golgi 2
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:golgi, peroxisome, plasma membrane
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:golgi
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G010990.2
HORVU2Hr1G038740.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 HORVU2Hr1G010990.2 AT2G16850.1 21798944
AT1G01620.1 HORVU2Hr1G038740.1 AT2G37180.1 21798944
AT1G01620.1 HORVU2Hr1G038740.1 AT3G54820.1 21798944
AT4G00430.1 HORVU2Hr1G010990.2 AT2G16850.1 21798944
AT4G00430.1 HORVU2Hr1G038740.1 AT2G37180.1 21798944
AT4G00430.1 HORVU2Hr1G038740.1 AT3G54820.1 21798944
AT4G23400.1 HORVU2Hr1G038740.1 AT2G37180.1 21798944
AT4G23400.1 HORVU2Hr1G038740.1 AT3G54820.1 21798944
AT4G23400.1 HORVU2Hr1G010990.2 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS6D01G227500.1 Wheat golgi 99.66 99.66
TraesCS6A01G245100.1 Wheat golgi, peroxisome, plasma membrane 98.97 98.97
TraesCS6B01G279200.1 Wheat plastid 98.62 98.62
Os02t0666200-01 Rice plasma membrane 95.52 95.85
EES07484 Sorghum plasma membrane 94.48 94.81
Zm00001d017526_P001 Maize plasma membrane 94.14 94.46
Zm00001d051403_P001 Maize plasma membrane 94.83 94.18
EES11257 Sorghum cytosol, peroxisome, plasma membrane 92.76 93.4
Zm00001d002690_P001 Maize plasma membrane 92.41 93.06
AT4G23400.1 Thale cress plasma membrane 87.59 88.5
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 86.9 88.11
Solyc01g094690.2.1 Tomato nucleus 86.55 88.07
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 86.55 87.46
CDX89115 Canola plasma membrane 67.59 87.11
CDX94185 Canola plasma membrane 86.21 87.11
CDY10936 Canola plasma membrane 86.21 87.11
CDY37078 Canola cytosol, peroxisome, plasma membrane 85.52 86.71
CDY38017 Canola plasma membrane 85.52 86.71
CDY27346 Canola cytosol, peroxisome, plasma membrane 85.52 86.71
AT3G61430.1 Thale cress plasma membrane 85.52 86.71
CDX83385 Canola cytosol, peroxisome, plasma membrane 85.52 86.71
CDY66912 Canola extracellular 61.38 86.41
CDY18886 Canola cytosol, peroxisome, plasma membrane 85.17 86.36
CDY51161 Canola cytosol, peroxisome, plasma membrane 85.17 86.36
CDX74777 Canola cytosol, peroxisome, plasma membrane 85.17 86.36
CDX95670 Canola cytosol, peroxisome, plasma membrane 85.17 86.36
CDX90046 Canola cytosol, peroxisome, plasma membrane 85.17 86.36
CDX74334 Canola cytosol, peroxisome, plasma membrane 85.52 86.11
Solyc03g096290.2.1 Tomato nucleus 84.83 86.01
CDX71738 Canola plasma membrane 84.83 86.01
CDY07221 Canola cytosol, peroxisome, plasma membrane 84.83 86.01
CDX91911 Canola cytosol, peroxisome, plasma membrane 85.17 85.76
CDY48920 Canola plasma membrane 84.48 85.66
Solyc12g056220.1.1 Tomato plastid 84.48 85.07
Solyc08g008050.2.1 Tomato peroxisome 83.1 83.97
Solyc08g081190.2.1 Tomato plastid 82.76 83.92
CDY66913 Canola cytosol, mitochondrion, nucleus 13.1 82.61
HORVU5Hr1G055200.4 Barley golgi, plastid 87.59 81.67
Bra039301.1-P Field mustard cytosol, peroxisome, plasma membrane 74.48 77.14
CDY15165 Canola plastid 85.52 76.54
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 78.28 75.42
KRG97766 Soybean endoplasmic reticulum, extracellular, mitochondrion, plasma membrane 33.79 73.13
HORVU2Hr1G089970.3 Barley endoplasmic reticulum, extracellular 19.31 65.88
HORVU2Hr1G089940.3 Barley plasma membrane 65.52 65.52
HORVU6Hr1G058930.20 Barley golgi, plasma membrane 59.66 59.86
PGSC0003DMT400064008 Potato extracellular 23.1 59.82
HORVU0Hr1G011280.5 Barley cytosol 53.1 58.78
HORVU0Hr1G014490.7 Barley plastid 59.66 58.25
HORVU5Hr1G125600.1 Barley golgi, peroxisome, plasma membrane 57.93 57.73
HORVU6Hr1G014300.1 Barley cytosol, golgi, peroxisome 56.9 56.51
HORVU2Hr1G038740.1 Barley golgi, mitochondrion, plasma membrane 66.21 56.3
HORVU5Hr1G027240.4 Barley plasma membrane 61.38 55.97
HORVU5Hr1G029550.2 Barley plasma membrane 61.03 55.66
HORVU2Hr1G010990.2 Barley plasma membrane 61.03 55.66
HORVU5Hr1G084230.1 Barley extracellular, golgi, mitochondrion 58.62 54.66
VIT_18s0001g06480.t01 Wine grape cytosol, extracellular, vacuole 26.21 53.9
VIT_12s0034g00250.t01 Wine grape cytosol, extracellular, plastid 20.69 50.42
HORVU2Hr1G089820.6 Barley golgi 40.34 40.91
HORVU7Hr1G038940.1 Barley golgi 27.24 38.73
HORVU7Hr1G081770.8 Barley plasma membrane 29.66 34.54
HORVU0Hr1G032130.2 Barley endoplasmic reticulum, plasma membrane, vacuole 28.97 33.73
HORVU6Hr1G062980.1 Barley endoplasmic reticulum, plasma membrane, vacuole 28.97 33.73
HORVU3Hr1G116790.2 Barley vacuole 28.97 33.33
HORVU4Hr1G079230.1 Barley vacuole 27.24 31.6
HORVU1Hr1G043890.2 Barley mitochondrion 26.9 29.66
HORVU2Hr1G097780.15 Barley golgi, mitochondrion, plastid 20.69 22.3
HORVU4Hr1G085250.2 Barley plastid 22.07 21.26
HORVU3Hr1G031620.5 Barley nucleus, peroxisome, plastid 22.76 20.75
HORVU3Hr1G031680.1 Barley vacuole 14.48 15.67
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EMBL:AK359326EMBL:AK360427InterPro:Aquaporin-likeInterPro:Aquaporin_transptr
UniProt:F2D616GO:GO:0003674GO:GO:0005215GO:GO:0005575GO:GO:0006810GO:GO:0008150
GO:GO:0015267GO:GO:0016020GO:GO:0016021GO:GO:0055085EnsemblPlantsGene:HORVU6Hr1G064140EnsemblPlants:HORVU6Hr1G064140.1
InterPro:IPR023271InterPro:MIPInterPro:MIP_CSPFAM:PF00230PRINTS:PR00783ScanProsite:PS00221
PANTHER:PTHR19139PANTHER:PTHR19139:SF262SUPFAM:SSF81338TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI00000A14C5
SEG:seg:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D616]
Coordinates
chrchr6H:+:433610640..433613912
Molecular Weight (calculated)
30855.5 Da
IEP (calculated)
9.064
GRAVY (calculated)
0.355
Length
290 amino acids
Sequence
(BLAST)
001: MEGKEEDVRL GANRYSERQP IGTAAQGGGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE FIATFLFLYV TVLTVMGVSK APSKCATVGV QGIAWSFGGM
101: IFALVYCTAG ISGGHINPAV TFGLFLARKL SLTRAIFYII MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG LGAEIIGTFV LVYTVFSATD
201: AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAIIYN RDHAWNDHWI FWVGPFVGAA LAAVYHQVII RAIPFNKSRS
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.