Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 1
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18886 | Canola | cytosol, peroxisome, plasma membrane | 86.71 | 91.26 |
| CDX74777 | Canola | cytosol, peroxisome, plasma membrane | 86.38 | 90.91 |
| CDY37078 | Canola | cytosol, peroxisome, plasma membrane | 86.05 | 90.56 |
| CDY27346 | Canola | cytosol, peroxisome, plasma membrane | 86.05 | 90.56 |
| CDX83385 | Canola | cytosol, peroxisome, plasma membrane | 86.05 | 90.56 |
| CDX95670 | Canola | cytosol, peroxisome, plasma membrane | 85.38 | 89.86 |
| Bra004950.1-P | Field mustard | cytosol, peroxisome, plasma membrane | 85.05 | 89.51 |
| AT3G61430.1 | Thale cress | plasma membrane | 84.72 | 89.16 |
| AT1G01620.1 | Thale cress | golgi, peroxisome, plasma membrane | 82.39 | 86.71 |
| AT4G00430.1 | Thale cress | golgi, peroxisome, plasma membrane | 82.06 | 86.06 |
| AT4G23400.1 | Thale cress | plasma membrane | 79.73 | 83.62 |
| VIT_13s0067g00220.t01 | Wine grape | plasma membrane | 77.41 | 81.47 |
| KRH66037 | Soybean | golgi, peroxisome, plasma membrane | 75.42 | 79.93 |
| TraesCS6B01G279200.1 | Wheat | plastid | 76.74 | 79.66 |
| PGSC0003DMT400000151 | Potato | cytosol, peroxisome, plasma membrane | 75.42 | 79.65 |
| Solyc01g094690.2.1 | Tomato | nucleus | 75.42 | 79.65 |
| Os04t0559700-01 | Rice | plasma membrane | 76.08 | 79.51 |
| Solyc08g008050.2.1 | Tomato | peroxisome | 75.75 | 79.44 |
| KRH59918 | Soybean | peroxisome | 75.75 | 79.44 |
| PGSC0003DMT400032134 | Potato | cytosol, peroxisome, plasma membrane | 75.42 | 79.37 |
| TraesCS2B01G425600.1 | Wheat | golgi, plasma membrane | 75.75 | 79.17 |
| PGSC0003DMT400014809 | Potato | peroxisome | 75.42 | 79.09 |
| KRH77555 | Soybean | plasma membrane | 75.08 | 79.02 |
| Zm00001d017526_P001 | Maize | plasma membrane | 75.75 | 78.89 |
| EES07484 | Sorghum | plasma membrane | 75.75 | 78.89 |
| TraesCS6D01G227500.1 | Wheat | golgi | 75.75 | 78.62 |
| KRH41192 | Soybean | endoplasmic reticulum | 75.42 | 78.55 |
| Os02t0666200-01 | Rice | plasma membrane | 75.42 | 78.55 |
| Solyc12g056220.1.1 | Tomato | plastid | 75.08 | 78.47 |
| Zm00001d002690_P001 | Maize | plasma membrane | 75.08 | 78.47 |
| Zm00001d051403_P001 | Maize | plasma membrane | 76.08 | 78.42 |
| Solyc08g081190.2.1 | Tomato | plastid | 74.42 | 78.32 |
| KRH27918 | Soybean | plasma membrane | 74.42 | 78.32 |
| HORVU6Hr1G064140.1 | Barley | golgi, peroxisome, plasma membrane | 75.42 | 78.28 |
| EES11257 | Sorghum | cytosol, peroxisome, plasma membrane | 74.75 | 78.12 |
| PGSC0003DMT400012780 | Potato | cytosol, peroxisome, plasma membrane | 74.75 | 78.12 |
| TraesCS2B01G605900.1 | Wheat | golgi, peroxisome, plasma membrane | 74.42 | 77.51 |
| GSMUA_Achr5P12400_001 | Banana | extracellular | 48.84 | 77.37 |
| PGSC0003DMT400053479 | Potato | plasma membrane | 73.42 | 77.27 |
| GSMUA_AchrUn_... | Banana | extracellular | 48.51 | 76.84 |
| TraesCS6B01G450000.1 | Wheat | unclear | 74.42 | 76.71 |
| TraesCS6D01G389500.1 | Wheat | plasma membrane | 74.42 | 76.71 |
| TraesCS6D01G389400.1 | Wheat | plasma membrane | 74.42 | 76.71 |
| KRH00178 | Soybean | golgi, peroxisome, plasma membrane | 73.09 | 76.66 |
| Solyc03g096290.2.1 | Tomato | nucleus | 72.76 | 76.57 |
| TraesCS6B01G450200.1 | Wheat | plastid | 74.09 | 76.37 |
| TraesCS5B01G178700.1 | Wheat | plasma membrane | 73.75 | 76.03 |
| TraesCS5D01G185400.1 | Wheat | plasma membrane | 73.75 | 76.03 |
| GSMUA_Achr8P11540_001 | Banana | extracellular | 47.84 | 75.79 |
| Zm00001d051872_P001 | Maize | plasma membrane | 72.43 | 75.69 |
| OQU85985 | Sorghum | cytosol, peroxisome, plasma membrane | 71.76 | 74.48 |
| TraesCS6B01G398000.1 | Wheat | extracellular | 30.9 | 72.66 |
| GSMUA_AchrUn_... | Banana | extracellular | 45.85 | 72.63 |
| TraesCS2D01G404800.2 | Wheat | golgi, peroxisome, plasma membrane | 75.75 | 72.61 |
| HORVU5Hr1G055200.4 | Barley | golgi, plastid | 73.42 | 71.06 |
| EER89434 | Sorghum | peroxisome | 69.1 | 70.27 |
| AT2G16850.1 | Thale cress | plasma membrane | 59.47 | 64.39 |
| TraesCS2A01G407700.2 | Wheat | golgi, peroxisome, plasma membrane | 61.46 | 64.01 |
| AT4G35100.1 | Thale cress | plasma membrane | 59.14 | 63.57 |
| AT2G37180.1 | Thale cress | plasma membrane | 59.47 | 62.81 |
| AT3G53420.1 | Thale cress | plasma membrane | 59.47 | 62.37 |
| KRH75838 | Soybean | golgi, peroxisome, plasma membrane | 75.08 | 62.26 |
| AT3G54820.1 | Thale cress | plasma membrane | 58.14 | 61.19 |
| AT5G60660.1 | Thale cress | plasma membrane | 58.8 | 60.82 |
| AT2G39010.1 | Thale cress | plasma membrane | 57.81 | 60.21 |
| AT2G37170.2 | Thale cress | plasma membrane | 59.47 | 54.57 |
| AT3G16240.1 | Thale cress | plasma membrane | 26.58 | 32.0 |
| AT2G25810.1 | Thale cress | cytosol, golgi, plasma membrane | 25.91 | 31.33 |
| AT5G47450.1 | Thale cress | golgi, plasma membrane | 24.92 | 30.0 |
| AT4G01470.1 | Thale cress | cytosol, golgi, plasma membrane | 24.92 | 29.76 |
| AT4G17340.1 | Thale cress | golgi, plasma membrane, vacuole | 24.58 | 29.6 |
| AT1G73190.1 | Thale cress | plasma membrane | 26.25 | 29.48 |
| AT3G26520.1 | Thale cress | plasma membrane | 24.58 | 29.25 |
| AT1G17810.1 | Thale cress | cytosol, golgi, plasma membrane | 25.58 | 28.84 |
| AT2G36830.1 | Thale cress | golgi, plasma membrane, vacuole | 23.92 | 28.69 |
| AT1G52180.1 | Thale cress | endoplasmic reticulum, extracellular, vacuole | 10.63 | 25.81 |
| AT3G47440.1 | Thale cress | mitochondrion, plastid | 21.26 | 25.0 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | EntrezGene:819204 | EntrezGene:825316 | UniProt:A8MRW1 | ProteinID:AEC10624.1 |
| ArrayExpress:AT2G45960 | EnsemblPlantsGene:AT2G45960 | RefSeq:AT2G45960 | TAIR:AT2G45960 | RefSeq:AT2G45960-TAIR-G | EnsemblPlants:AT2G45960.3 |
| TAIR:AT2G45960.3 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 |
| GO:GO:0006833 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009414 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009628 | GO:GO:0009651 | GO:GO:0015250 | GO:GO:0015267 | GO:GO:0015670 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0046658 | GO:GO:0055085 | InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS |
| RefSeq:NP_001078067.1 | PFAM:PF00230 | Symbol:PIP1B | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007131 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00783 |
| ScanProsite:PS00221 | PANTHER:PTHR19139 | PANTHER:PTHR19139:SF202 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix |
| UniParc:UPI0001505508 | : | : | : | : | : |
Description
PIP1BPlasma membrane intrinsic protein 1B [Source:UniProtKB/TrEMBL;Acc:A8MRW1]
Coordinates
chr2:+:18910295..18911982
Molecular Weight (calculated)
32456.6 Da
IEP (calculated)
8.623
GRAVY (calculated)
0.304
Length
301 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSDKD YKEPPPAPLF EPGELASWSF WRAGIAEFIA TFLFLYITVL TVMGVKRSPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIFNKDN AWDDHVMGLL GWTIHWCCTC CSLPRYSHQS HPIQVQKLKL IEFYLKSGFC
301: S
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIFNKDN AWDDHVMGLL GWTIHWCCTC CSLPRYSHQS HPIQVQKLKL IEFYLKSGFC
301: S
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.