Factsheet for TraesCS2D01G404800.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, plasma membrane

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, peroxisome, plasma membrane
Any Predictor:	peroxisome, secretory
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS5A01G316300.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5B01G316800.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5D01G322500.1	AT4G24090.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2A01G065700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2B01G077700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2D01G063900.1	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G425600.1	Wheat	golgi, plasma membrane	84.39	92.01
TraesCS2B01G605900.1	Wheat	golgi, peroxisome, plasma membrane	83.12	90.31
TraesCS6D01G227500.1	Wheat	golgi	79.62	86.21
CDY66913	Canola	cytosol, mitochondrion, nucleus	12.42	84.78
AT4G23400.1	Thale cress	plasma membrane	75.16	82.23
Solyc01g094690.2.1	Tomato	nucleus	74.52	82.11
CDY10936	Canola	plasma membrane	74.2	81.18
CDX94185	Canola	plasma membrane	74.2	81.18
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	73.89	80.84
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	73.57	80.77
CDY38017	Canola	plasma membrane	73.57	80.77
Solyc08g081190.2.1	Tomato	plastid	73.25	80.42
Solyc03g096290.2.1	Tomato	nucleus	73.25	80.42
CDY51161	Canola	cytosol, peroxisome, plasma membrane	73.25	80.42
TraesCS5D01G185400.1	Wheat	plasma membrane	74.52	80.14
CDY27346	Canola	cytosol, peroxisome, plasma membrane	72.93	80.07
CDY37078	Canola	cytosol, peroxisome, plasma membrane	72.93	80.07
CDX83385	Canola	cytosol, peroxisome, plasma membrane	72.93	80.07
CDY07221	Canola	cytosol, peroxisome, plasma membrane	72.93	80.07
CDX74334	Canola	cytosol, peroxisome, plasma membrane	73.25	79.86
TraesCS6D01G389500.1	Wheat	plasma membrane	74.2	79.79
TraesCS6D01G389400.1	Wheat	plasma membrane	74.2	79.79
CDX74777	Canola	cytosol, peroxisome, plasma membrane	72.61	79.72
CDX90046	Canola	cytosol, peroxisome, plasma membrane	72.61	79.72
CDX95670	Canola	cytosol, peroxisome, plasma membrane	72.61	79.72
CDX91911	Canola	cytosol, peroxisome, plasma membrane	72.93	79.51
CDX71738	Canola	plasma membrane	72.29	79.37
AT3G61430.1	Thale cress	plasma membrane	72.29	79.37
CDY18886	Canola	cytosol, peroxisome, plasma membrane	72.29	79.37
CDY48920	Canola	plasma membrane	71.97	79.02
Solyc12g056220.1.1	Tomato	plastid	72.29	78.82
CDX89115	Canola	plasma membrane	56.37	78.67
CDY66912	Canola	extracellular	51.59	78.64
Solyc08g008050.2.1	Tomato	peroxisome	71.66	78.4
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	72.61	75.75
CDY15165	Canola	plastid	73.25	70.99
TraesCS2D01G063900.1	Wheat	plasma membrane	57.01	63.03
TraesCS5D01G112500.1	Wheat	plasma membrane	57.01	62.59
TraesCS2D01G376000.1	Wheat	golgi	57.32	62.07
TraesCS2D01G376100.1	Wheat	plasma membrane	57.32	62.07
TraesCS6D01G212900.1	Wheat	golgi, plasma membrane	56.37	61.89
TraesCS2D01G206300.1	Wheat	golgi	56.69	61.38
KRG97766	Soybean	endoplasmic reticulum, extracellular, mitochondrion, plasma membrane	25.8	60.45
PGSC0003DMT400064008	Potato	extracellular	21.34	59.82
TraesCS5D01G561700.1	Wheat	golgi, peroxisome, plasma membrane	53.18	58.8
TraesCS5D01G338200.1	Wheat	plasma membrane	52.23	56.36
TraesCS4D01G355600.1	Wheat	golgi, peroxisome, plasma membrane	51.59	55.48
TraesCS5D01G560400.1	Wheat	golgi, peroxisome, plasma membrane	50.64	54.64
TraesCS5D01G548900.1	Wheat	golgi, peroxisome, plasma membrane	50.0	54.33
TraesCS6D01G076400.1	Wheat	golgi, peroxisome, plasma membrane	50.32	53.56
VIT_12s0034g00250.t01	Wine grape	cytosol, extracellular, plastid	18.79	49.58
VIT_18s0001g06480.t01	Wine grape	cytosol, extracellular, vacuole	21.66	48.23
TraesCS7D01G192200.1	Wheat	golgi, peroxisome, plasma membrane	45.54	47.04
TraesCS2D01G411400.1	Wheat	plasma membrane	24.84	31.45
TraesCS6D01G232100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	24.84	31.33
TraesCS3D01G540900.1	Wheat	plasma membrane	24.2	30.16
TraesCS7D01G339600.1	Wheat	plasma membrane	25.8	29.03
TraesCS2D01G370800.1	Wheat	plasma membrane	24.2	28.68
TraesCS3D01G163400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	22.29	28.46
TraesCS2D01G411500.1	Wheat	endoplasmic reticulum	23.57	28.24
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	22.93	28.02
TraesCS1D01G175200.1	Wheat	unclear	22.93	27.38
TraesCS4D01G344300.1	Wheat	plasma membrane	19.75	24.31

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2D01G404800
EnsemblPlants:TraesCS2D01G404800.2	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2D:-:519133170..519134779

Molecular Weight (calculated)

33739.0 Da

IEP (calculated)

9.318

GRAVY (calculated)

0.113

Length

314 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANKYSERQP IGTAAQGSED KDYKEPPPAP LFEPGELKSW SFYRAGIAEF MATFLFLYVT ILTVMGYSGA ASKCATVGIQ GIAWSFGGMI
101: FALVYCTAGI SGGHINPAVT FGLFLARKLS LTRAVFYIIM QCLGAICGAG VVKGFQQGLY MGNGGGANVV APGYTKGSGL GAEIIGTFVL VYTVFSATDA
201: KRNARDSHVP ILAPLPIGFA VFLVHLATIP ITGTGINPAR SLGAAIIYNR EHAWSDHVMD LLGRPLHRRR ARRRLPPGGH QSDPVQDQVL SCCSSCYKED
301: ANPTRRAKLR VLNF

Best Arabidopsis Sequence Match ( AT2G45960.3 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQSDKD YKEPPPAPLF EPGELASWSF WRAGIAEFIA TFLFLYITVL TVMGVKRSPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIFNKDN AWDDHVMGLL GWTIHWCCTC CSLPRYSHQS HPIQVQKLKL IEFYLKSGFC
301: S

Arabidopsis Description

PIP1BPlasma membrane intrinsic protein 1B [Source:UniProtKB/TrEMBL;Acc:A8MRW1]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.