Subcellular Localization
min:
: max
Winner_takes_all: golgi, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- golgi 2
- extracellular 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G002000.1 | Wheat | golgi, peroxisome, plasma membrane | 97.18 | 97.18 |
| HORVU0Hr1G014490.7 | Barley | plastid | 89.08 | 85.19 |
| OQU91911 | Sorghum | plasma membrane | 78.87 | 79.43 |
| Zm00001d014285_P001 | Maize | plasma membrane | 77.11 | 77.39 |
| TraesCS2D01G206300.1 | Wheat | golgi | 77.11 | 75.52 |
| TraesCS5D01G560400.1 | Wheat | golgi, peroxisome, plasma membrane | 76.41 | 74.57 |
| TraesCS2D01G376000.1 | Wheat | golgi | 75.7 | 74.14 |
| TraesCS2D01G376100.1 | Wheat | plasma membrane | 75.7 | 74.14 |
| TraesCS5D01G548900.1 | Wheat | golgi, peroxisome, plasma membrane | 75.0 | 73.7 |
| TraesCS4D01G355600.1 | Wheat | golgi, peroxisome, plasma membrane | 75.7 | 73.63 |
| TraesCS5D01G112500.1 | Wheat | plasma membrane | 73.59 | 73.08 |
| TraesCS6D01G212900.1 | Wheat | golgi, plasma membrane | 72.54 | 72.03 |
| TraesCS2D01G063900.1 | Wheat | plasma membrane | 69.37 | 69.37 |
| TraesCS6D01G076400.1 | Wheat | golgi, peroxisome, plasma membrane | 71.13 | 68.47 |
| TraesCS5D01G338200.1 | Wheat | plasma membrane | 65.14 | 63.57 |
| TraesCS6D01G389500.1 | Wheat | plasma membrane | 64.44 | 62.67 |
| TraesCS6D01G389400.1 | Wheat | plasma membrane | 64.08 | 62.33 |
| TraesCS6D01G227500.1 | Wheat | golgi | 63.38 | 62.07 |
| TraesCS5D01G185400.1 | Wheat | plasma membrane | 63.73 | 61.99 |
| TraesCS2D01G404800.2 | Wheat | golgi, peroxisome, plasma membrane | 58.8 | 53.18 |
| TraesCS7D01G192200.1 | Wheat | golgi, peroxisome, plasma membrane | 55.28 | 51.64 |
| TraesCS6D01G232100.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 33.8 | 38.55 |
| TraesCS2D01G411400.1 | Wheat | plasma membrane | 33.45 | 38.31 |
| TraesCS3D01G540900.1 | Wheat | plasma membrane | 33.1 | 37.3 |
| TraesCS4D01G308800.1 | Wheat | golgi, plasma membrane, vacuole | 32.39 | 35.8 |
| TraesCS3D01G163400.1 | Wheat | endoplasmic reticulum, extracellular, vacuole | 29.58 | 34.15 |
| TraesCS7D01G339600.1 | Wheat | plasma membrane | 33.45 | 34.05 |
| TraesCS2D01G370800.1 | Wheat | plasma membrane | 31.34 | 33.58 |
| TraesCS1D01G175200.1 | Wheat | unclear | 29.23 | 31.56 |
| TraesCS2D01G411500.1 | Wheat | endoplasmic reticulum | 28.52 | 30.92 |
| TraesCS4D01G344300.1 | Wheat | plasma membrane | 27.11 | 30.2 |
Protein Annotations
| Gene3D:1.20.1080.10 | MapMan:24.3.1.2 | InterPro:Aquaporin-like | InterPro:Aquaporin_transptr | GO:GO:0003674 | GO:GO:0005215 |
| GO:GO:0005575 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0015267 | GO:GO:0016020 | GO:GO:0055085 |
| InterPro:IPR023271 | InterPro:MIP | InterPro:MIP_CS | PFAM:PF00230 | PRINTS:PR00783 | ScanProsite:PS00221 |
| PANTHER:PTHR19139 | PANTHER:PTHR19139:SF163 | SUPFAM:SSF81338 | TIGRFAMs:TIGR00861 | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5D01G561700 |
| EnsemblPlants:TraesCS5D01G561700.1 | TIGR:cd00333 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:+:562029013..562029867
Molecular Weight (calculated)
29802.5 Da
IEP (calculated)
9.865
GRAVY (calculated)
0.445
Length
284 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPNGNNDNN NAAKDYRDPP PAPLINAGEL GKWSLWRAVI AEFTATLLFV YVTVATVIGH KRQTDATVGC GGAGILGIAW AFGGMIFVLV YCTAGVSGGH
101: INPAVTFGLL LARKVSLVRA LLYMVAQCLG AMCGAGLVKA VHGAQYARHG GGANELAPGY SKGAGLAAEI IGTFVLVYTV FAATDPKRKA RDSHVPVLAP
201: LPIGFAVLIV HLATIPITGT GINPARSLGP AVVYNNKKAW DDQWIFWVGP FIGAAIAMVY HQYIIRGGAG KAFASFRHNY IATA
101: INPAVTFGLL LARKVSLVRA LLYMVAQCLG AMCGAGLVKA VHGAQYARHG GGANELAPGY SKGAGLAAEI IGTFVLVYTV FAATDPKRKA RDSHVPVLAP
201: LPIGFAVLIV HLATIPITGT GINPARSLGP AVVYNNKKAW DDQWIFWVGP FIGAAIAMVY HQYIIRGGAG KAFASFRHNY IATA
001: MAKDVEGPEG FQTRDYEDPP PTPFFDADEL TKWSLYRAVI AEFVATLLFL YITVLTVIGY KIQSDTKAGG VDCGGVGILG IAWAFGGMIF ILVYCTAGIS
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
101: GGHINPAVTF GLFLARKVSL IRAVLYMVAQ CLGAICGVGF VKAFQSSYYD RYGGGANSLA DGYNTGTGLA AEIIGTFVLV YTVFSATDPK RNARDSHVPV
201: LAPLPIGFAV FMVHLATIPI TGTGINPARS FGAAVIYNKS KPWDDHWIFW VGPFIGAAIA AFYHQFVLRA SGSKSLGSFR SAANV
Arabidopsis Description
PIP2Bplasma membrane intrinsic protein 2 [Source:TAIR;Acc:AT2G37170]
SUBAcon: [golgi,plasma membrane,peroxisome]
SUBAcon: [golgi,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.