Factsheet for TraesCS6D01G227500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	golgi, peroxisome, plasma membrane
MultiLoc:	golgi
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	peroxisome

plasma membrane: 21723739

golgi: 23128297
golgi: 25769308
unclear: 25769308

gfp PMID: 21723739 doi

M Ayadi, D Cavez, N Miled, F Chaumont, K Masmoudi

Plant Protection and Improvement Laboratory, Centre of Biotechnology of Sfax, University of Sfax, Route Sidi Mansour Km 6, BP 1177, 3018 Sfax, Tunisia.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G065700.1
TraesCS2A01G198500.1
TraesCS2B01G077700.1
TraesCS2B01G225900.1
TraesCS2D01G063900.1
TraesCS2D01G206300.1
TraesCS5A01G316300.1
TraesCS5B01G316800.1
TraesCS5D01G322500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01620.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT1G01620.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT1G01620.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2A01G065700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2B01G077700.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2D01G063900.1	AT2G16850.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G00430.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G00430.1	TraesCS5A01G316300.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5B01G316800.1	AT4G24090.1	21798944
AT4G00430.1	TraesCS5D01G322500.1	AT4G24090.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT2G37180.1	21798944
AT4G23400.1	TraesCS2A01G198500.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2B01G225900.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2D01G206300.1	AT3G54820.1	21798944
AT4G23400.1	TraesCS2A01G065700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2B01G077700.1	AT4G35100.1	21798944
AT4G23400.1	TraesCS2D01G063900.1	AT4G35100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G064140.1	Barley	golgi, peroxisome, plasma membrane	99.66	99.66
TraesCS6A01G245100.1	Wheat	golgi, peroxisome, plasma membrane	99.31	99.31
TraesCS6B01G279200.1	Wheat	plastid	98.97	98.97
Os02t0666200-01	Rice	plasma membrane	95.86	96.19
EES07484	Sorghum	plasma membrane	94.83	95.16
Zm00001d017526_P001	Maize	plasma membrane	94.48	94.81
Zm00001d051403_P001	Maize	plasma membrane	95.17	94.52
EES11257	Sorghum	cytosol, peroxisome, plasma membrane	93.1	93.75
Zm00001d002690_P001	Maize	plasma membrane	92.76	93.4
AT4G23400.1	Thale cress	plasma membrane	87.24	88.15
AT1G01620.1	Thale cress	golgi, peroxisome, plasma membrane	86.55	87.76
Solyc01g094690.2.1	Tomato	nucleus	86.21	87.72
TraesCS5D01G185400.1	Wheat	plasma membrane	88.28	87.67
CDX89115	Canola	plasma membrane	67.93	87.56
TraesCS6D01G389500.1	Wheat	plasma membrane	87.93	87.33
TraesCS6D01G389400.1	Wheat	plasma membrane	87.93	87.33
AT4G00430.1	Thale cress	golgi, peroxisome, plasma membrane	86.21	87.11
AT3G61430.1	Thale cress	plasma membrane	85.86	87.06
CDX83385	Canola	cytosol, peroxisome, plasma membrane	85.86	87.06
CDY10936	Canola	plasma membrane	85.86	86.76
CDX94185	Canola	plasma membrane	85.86	86.76
CDX95670	Canola	cytosol, peroxisome, plasma membrane	85.52	86.71
CDX74777	Canola	cytosol, peroxisome, plasma membrane	85.52	86.71
CDY18886	Canola	cytosol, peroxisome, plasma membrane	85.52	86.71
CDY66912	Canola	extracellular	61.38	86.41
CDX71738	Canola	plasma membrane	85.17	86.36
CDY38017	Canola	plasma membrane	85.17	86.36
CDY37078	Canola	cytosol, peroxisome, plasma membrane	85.17	86.36
CDY27346	Canola	cytosol, peroxisome, plasma membrane	85.17	86.36
Solyc03g096290.2.1	Tomato	nucleus	85.17	86.36
CDX90046	Canola	cytosol, peroxisome, plasma membrane	84.83	86.01
CDY51161	Canola	cytosol, peroxisome, plasma membrane	84.83	86.01
CDY48920	Canola	plasma membrane	84.83	86.01
CDX74334	Canola	cytosol, peroxisome, plasma membrane	85.17	85.76
CDY07221	Canola	cytosol, peroxisome, plasma membrane	84.48	85.66
Solyc12g056220.1.1	Tomato	plastid	84.83	85.42
CDX91911	Canola	cytosol, peroxisome, plasma membrane	84.83	85.42
Solyc08g008050.2.1	Tomato	peroxisome	83.45	84.32
Solyc08g081190.2.1	Tomato	plastid	83.1	84.27
CDY66913	Canola	cytosol, mitochondrion, nucleus	13.1	82.61
TraesCS2D01G404800.2	Wheat	golgi, peroxisome, plasma membrane	86.21	79.62
Bra039301.1-P	Field mustard	cytosol, peroxisome, plasma membrane	74.14	76.79
CDY15165	Canola	plastid	85.17	76.23
AT2G45960.3	Thale cress	golgi, peroxisome, plasma membrane	78.62	75.75
TraesCS2D01G063900.1	Wheat	plasma membrane	66.9	68.31
TraesCS5D01G112500.1	Wheat	plasma membrane	66.9	67.83
TraesCS2D01G206300.1	Wheat	golgi	66.55	66.55
TraesCS6D01G212900.1	Wheat	golgi, plasma membrane	65.17	66.08
TraesCS2D01G376000.1	Wheat	golgi	65.86	65.86
TraesCS2D01G376100.1	Wheat	plasma membrane	65.52	65.52
TraesCS5D01G561700.1	Wheat	golgi, peroxisome, plasma membrane	62.07	63.38
TraesCS5D01G560400.1	Wheat	golgi, peroxisome, plasma membrane	59.66	59.45
TraesCS4D01G355600.1	Wheat	golgi, peroxisome, plasma membrane	59.31	58.9
TraesCS5D01G548900.1	Wheat	golgi, peroxisome, plasma membrane	58.62	58.82
TraesCS5D01G338200.1	Wheat	plasma membrane	58.28	58.08
TraesCS6D01G076400.1	Wheat	golgi, peroxisome, plasma membrane	57.24	56.27
TraesCS7D01G192200.1	Wheat	golgi, peroxisome, plasma membrane	53.1	50.66
TraesCS6D01G232100.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	28.97	33.73
TraesCS3D01G540900.1	Wheat	plasma membrane	28.97	33.33
TraesCS2D01G411400.1	Wheat	plasma membrane	28.28	33.06
TraesCS7D01G339600.1	Wheat	plasma membrane	31.03	32.26
TraesCS2D01G411500.1	Wheat	endoplasmic reticulum	28.62	31.68
TraesCS4D01G308800.1	Wheat	golgi, plasma membrane, vacuole	27.93	31.52
TraesCS3D01G163400.1	Wheat	endoplasmic reticulum, extracellular, vacuole	26.21	30.89
TraesCS2D01G370800.1	Wheat	plasma membrane	27.93	30.57
TraesCS1D01G175200.1	Wheat	unclear	26.9	29.66
TraesCS4D01G344300.1	Wheat	plasma membrane	22.41	25.49

Protein Annotations

Gene3D:1.20.1080.10	MapMan:24.3.1.2	InterPro:Aquaporin-like	InterPro:Aquaporin_transptr	GO:GO:0003674	GO:GO:0005215
GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0015267	GO:GO:0016020	GO:GO:0055085
InterPro:IPR023271	InterPro:MIP	InterPro:MIP_CS	PFAM:PF00230	PRINTS:PR00783	ScanProsite:PS00221
PANTHER:PTHR19139	PANTHER:PTHR19139:SF262	SUPFAM:SSF81338	TIGRFAMs:TIGR00861	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G227500
EnsemblPlants:TraesCS6D01G227500.1	TIGR:cd00333	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:-:318952486..318955077

Molecular Weight (calculated)

30871.5 Da

IEP (calculated)

9.064

GRAVY (calculated)

0.346

Length

290 amino acids

Sequence
(BLAST)

001: MEGKEEDVRL GANRYSERQP IGTAAQGGGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE FIATFLFLYV TVLTVMGVSK SPSKCATVGV QGIAWSFGGM
101: IFALVYCTAG ISGGHINPAV TFGLFLARKL SLTRAIFYII MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG LGAEIIGTFV LVYTVFSATD
201: AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA RSLGAAIIYN RDHAWNDHWI FWVGPFVGAA LAAVYHQVII RAIPFNKSRS

Best Arabidopsis Sequence Match ( AT2G45960.1 )
(BLAST)

001: MEGKEEDVRV GANKFPERQP IGTSAQSDKD YKEPPPAPLF EPGELASWSF WRAGIAEFIA TFLFLYITVL TVMGVKRSPN MCASVGIQGI AWAFGGMIFA
101: LVYCTAGISG GHINPAVTFG LFLARKLSLT RAVYYIVMQC LGAICGAGVV KGFQPKQYQA LGGGANTIAH GYTKGSGLGA EIIGTFVLVY TVFSATDAKR
201: NARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL GAAIIFNKDN AWDDHWVFWV GPFIGAALAA LYHVIVIRAI PFKSRS

Arabidopsis Description

PIP1BPlasma membrane intrinsic protein 1B [Source:UniProtKB/TrEMBL;Acc:A8MRW1]
SUBAcon: [peroxisome,golgi,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.