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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 1
  • cytosol 1
  • plasma membrane 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
EpiLoc:plastid
MultiLoc:cytosol
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:plasma membrane
YLoc:peroxisome
 plastid: 20363867
plastid: 26371478
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 20363867 doi
C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID: 26371478 doi
M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g111660.2.1
Solyc06g011350.2.1
Solyc06g074170.2.1
Solyc08g083010.2.1
Solyc10g084120.1.1
Solyc11g068750.1.1
Solyc11g069430.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G01620.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT1G01620.1 Solyc06g011350.2.1 AT2G39010.1 21798944
AT1G01620.1 Solyc11g069430.1.1 AT2G39010.1 21798944
AT1G01620.1 Solyc06g074170.2.1 AT5G22290.1 21798944
AT1G01620.1 Solyc11g068750.1.1 AT5G22290.1 21798944
AT4G00430.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G00430.1 Solyc08g083010.2.1 AT4G24090.1 21798944
AT4G23400.1 Solyc10g084120.1.1 AT2G37180.1 21798944
AT4G23400.1 Solyc01g111660.2.1 AT4G35100.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400012780 Potato cytosol, peroxisome, plasma membrane 97.92 97.92
Solyc08g008050.2.1 Tomato peroxisome 94.1 94.43
Solyc08g081190.2.1 Tomato plastid 93.75 94.41
GSMUA_AchrUn_... Banana extracellular 59.38 90.0
GSMUA_Achr5P12400_001 Banana extracellular 58.33 88.42
GSMUA_Achr8P11540_001 Banana extracellular 57.99 87.89
AT1G01620.1 Thale cress golgi, peroxisome, plasma membrane 86.81 87.41
GSMUA_AchrUn_... Banana extracellular 57.29 86.84
VIT_02s0025g03390.t01 Wine grape peroxisome 86.46 86.76
AT4G00430.1 Thale cress golgi, peroxisome, plasma membrane 86.46 86.76
TraesCS6B01G398000.1 Wheat extracellular 38.54 86.72
Bra032644.1-P Field mustard plasma membrane 86.11 86.71
CDX83385 Canola cytosol, peroxisome, plasma membrane 86.11 86.71
Solyc01g094690.2.1 Tomato nucleus 85.76 86.67
CDY66912 Canola extracellular 61.81 86.41
CDX74777 Canola cytosol, peroxisome, plasma membrane 85.76 86.36
CDX95670 Canola cytosol, peroxisome, plasma membrane 85.76 86.36
CDX89115 Canola plasma membrane 67.36 86.22
AT4G23400.1 Thale cress plasma membrane 85.76 86.06
CDX90046 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
Bra033248.1-P Field mustard cytosol, peroxisome, plasma membrane 85.42 86.01
CDY07221 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
CDY51161 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
CDY18886 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
CDY27346 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
CDY37078 Canola cytosol, peroxisome, plasma membrane 85.42 86.01
CDY38017 Canola plasma membrane 85.42 86.01
KRH59918 Soybean peroxisome 85.42 85.71
CDY10936 Canola plasma membrane 85.42 85.71
CDY48920 Canola plasma membrane 85.07 85.66
KRH41192 Soybean endoplasmic reticulum 85.76 85.47
Bra000974.1-P Field mustard cytosol, peroxisome, plasma membrane 85.42 85.42
CDX74334 Canola cytosol, peroxisome, plasma membrane 85.42 85.42
TraesCS2B01G425600.1 Wheat golgi, plasma membrane 85.42 85.42
Os04t0559700-01 Rice plasma membrane 85.42 85.42
CDX94185 Canola plasma membrane 85.07 85.37
Bra019307.1-P Field mustard cytosol, peroxisome, plasma membrane 85.07 85.37
Bra004950.1-P Field mustard cytosol, peroxisome, plasma membrane 84.72 85.31
CDX71738 Canola plasma membrane 84.72 85.31
TraesCS6B01G279200.1 Wheat plastid 85.76 85.17
EES07484 Sorghum plasma membrane 85.42 85.12
Zm00001d017526_P001 Maize plasma membrane 85.42 85.12
Os02t0666200-01 Rice plasma membrane 85.42 85.12
EES11257 Sorghum cytosol, peroxisome, plasma membrane 85.07 85.07
CDX91911 Canola cytosol, peroxisome, plasma membrane 85.07 85.07
VIT_15s0046g02420.t01 Wine grape peroxisome 84.38 84.97
Bra007603.1-P Field mustard plasma membrane 84.38 84.97
KRH66037 Soybean golgi, peroxisome, plasma membrane 83.68 84.86
TraesCS6D01G227500.1 Wheat golgi 85.42 84.83
Zm00001d002690_P001 Maize plasma membrane 84.72 84.72
AT3G61430.1 Thale cress plasma membrane 84.03 84.62
Solyc03g096290.2.1 Tomato nucleus 84.03 84.62
HORVU6Hr1G064140.1 Barley golgi, peroxisome, plasma membrane 85.07 84.48
Bra014437.1-P Field mustard plasma membrane 83.68 84.27
KRH77555 Soybean plasma membrane 83.68 84.27
Zm00001d051403_P001 Maize plasma membrane 85.07 83.9
TraesCS2B01G605900.1 Wheat golgi, peroxisome, plasma membrane 84.03 83.74
KRH27918 Soybean plasma membrane 82.99 83.57
Zm00001d051872_P001 Maize plasma membrane 83.33 83.33
TraesCS6D01G389400.1 Wheat plasma membrane 83.68 82.53
TraesCS6B01G450000.1 Wheat unclear 83.68 82.53
TraesCS6D01G389500.1 Wheat plasma membrane 83.33 82.19
TraesCS5B01G178700.1 Wheat plasma membrane 82.99 81.85
TraesCS5D01G185400.1 Wheat plasma membrane 82.99 81.85
TraesCS6B01G450200.1 Wheat plastid 82.99 81.85
KRH00178 Soybean golgi, peroxisome, plasma membrane 81.25 81.53
OQU85985 Sorghum cytosol, peroxisome, plasma membrane 81.94 81.38
VIT_15s0046g02410.t01 Wine grape plasma membrane 77.78 78.32
CDY15165 Canola plastid 86.11 76.54
HORVU5Hr1G055200.4 Barley golgi, plastid 82.64 76.53
CDY66913 Canola cytosol, mitochondrion, nucleus 12.15 76.09
AT2G45960.3 Thale cress golgi, peroxisome, plasma membrane 78.47 75.08
EER89434 Sorghum peroxisome 76.74 74.66
TraesCS2D01G404800.2 Wheat golgi, peroxisome, plasma membrane 78.82 72.29
Solyc09g007770.2.1 Tomato nucleus 64.58 71.81
Solyc10g084120.1.1 Tomato nucleus 67.36 69.04
Solyc02g083510.2.1 Tomato nucleus 61.81 68.73
Solyc06g011350.2.1 Tomato nucleus 66.67 68.57
Solyc11g069430.1.1 Tomato plastid 68.06 68.29
Solyc01g111660.2.1 Tomato nucleus 66.67 67.84
TraesCS2A01G407700.2 Wheat golgi, peroxisome, plasma membrane 66.67 66.44
Solyc10g055630.1.1 Tomato nucleus, plastid 65.28 66.43
KRH75838 Soybean golgi, peroxisome, plasma membrane 81.25 64.46
Solyc09g007760.2.1 Tomato extracellular 65.97 62.09
Solyc05g055990.2.1 Tomato nucleus, plasma membrane 57.64 57.44
Solyc12g044330.1.1 Tomato plastid 30.21 35.08
Solyc06g060760.2.1 Tomato endoplasmic reticulum 29.86 34.4
Solyc06g072130.2.1 Tomato extracellular 30.56 33.98
Solyc10g083880.1.1 Tomato plastid 28.47 33.06
Solyc06g075650.2.1 Tomato endoplasmic reticulum 28.82 32.81
Solyc06g074820.2.1 Tomato plastid 27.78 32.0
Solyc06g066560.1.1 Tomato mitochondrion 30.21 31.87
Solyc03g019820.2.1 Tomato cytosol, golgi, plasma membrane 28.12 31.15
Solyc08g066840.2.1 Tomato endoplasmic reticulum, plasma membrane 26.04 30.36
Solyc03g093230.2.1 Tomato plastid 25.35 29.08
Protein Annotations
Gene3D:1.20.1080.10MapMan:24.3.1.2EMBL:AB845606InterPro:Aquaporin-likeInterPro:Aquaporin_transptrGO:GO:0003674
GO:GO:0005215GO:GO:0005575GO:GO:0005623GO:GO:0005886GO:GO:0005887GO:GO:0006810
GO:GO:0006833GO:GO:0008150GO:GO:0015250GO:GO:0015267GO:GO:0016020GO:GO:0016021
GO:GO:0034220GO:GO:0055085InterPro:IPR023271UniProt:K4DFV3InterPro:MIPInterPro:MIP_CS
PFAM:PF00230PRINTS:PR00783ScanProsite:PS00221PANTHER:PTHR19139PANTHER:PTHR19139:SF169SUPFAM:SSF81338
EnsemblPlantsGene:Solyc12g056220.1EnsemblPlants:Solyc12g056220.1.1TIGRFAMs:TIGR00861TMHMM:TMhelixUniParc:UPI0001B34C10:
Description
Plasmamembrane intrinsic protein 13 [Source:UniProtKB/TrEMBL;Acc:K4DFV3]
Coordinates
chr12:-:62177603..62179374
Molecular Weight (calculated)
30823.5 Da
IEP (calculated)
7.960
GRAVY (calculated)
0.401
Length
288 amino acids
Sequence
(BLAST)
001: MAENKEEDVN LGANKYRETQ PLGTAAQTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFM ATFLFLYITI LTVMGLKRSD SLCSSVGVQG VAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYIVMQ CLGAICGAGV VKGFMVGPYE RLGGGANVVN PGYTKGDGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIFNKD EAWDDHWIFW VGPFIGAALA AVYHQIIIRA IPFKSSRS
Best Arabidopsis Sequence Match ( AT4G00430.1 )
(BLAST)
001: MEGKEEDVRV GANKFPERQP IGTSAQSTDK DYKEPPPAPL FEPGELSSWS FYRAGIAEFI ATFLFLYITV LTVMGVKRAP NMCASVGIQG IAWAFGGMIF
101: ALVYCTAGIS GGHINPAVTF GLFLARKLSL TRAVFYMIMQ CLGAICGAGV VKGFQPTPYQ TLGGGANTVA HGYTKGSGLG AEIIGTFVLV YTVFSATDAK
201: RSARDSHVPI LAPLPIGFAV FLVHLATIPI TGTGINPARS LGAAIIYNKD HSWDDHWIFW VGPFIGAALA ALYHQIVIRA IPFKSKS
Arabidopsis Description
PIP1.4TMP-C [Source:UniProtKB/TrEMBL;Acc:A0A178USZ7]
SUBAcon: [peroxisome,golgi,plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.