Factsheet for Solyc08g083010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g094690.2.1
Solyc03g096290.2.1
Solyc08g008050.2.1
Solyc08g081190.2.1
Solyc12g056220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24090.1	Solyc01g094690.2.1	AT1G01620.1	21798944
AT4G24090.1	Solyc03g096290.2.1	AT1G01620.1	21798944
AT4G24090.1	Solyc08g008050.2.1	AT1G01620.1	21798944
AT4G24090.1	Solyc08g081190.2.1	AT1G01620.1	21798944
AT4G24090.1	Solyc12g056220.1.1	AT1G01620.1	21798944
AT4G24090.1	Solyc01g094690.2.1	AT3G61430.1	21798944
AT4G24090.1	Solyc03g096290.2.1	AT3G61430.1	21798944
AT4G24090.1	Solyc08g008050.2.1	AT3G61430.1	21798944
AT4G24090.1	Solyc08g081190.2.1	AT3G61430.1	21798944
AT4G24090.1	Solyc12g056220.1.1	AT3G61430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031912	Potato	cytosol	81.35	97.68
VIT_02s0025g02450.t01	Wine grape	plastid	56.27	55.56
KRH40927	Soybean	plastid	50.16	53.24
AT4G24090.1	Thale cress	plastid	52.09	52.6
Os09t0529350-01	Rice	plastid	32.15	50.51
Zm00001d010435_P001	Maize	mitochondrion	1.93	50.0
Zm00001d044473_P001	Maize	mitochondrion	1.93	50.0
Bra013761.1-P	Field mustard	plastid	50.16	49.68
TraesCS5A01G316300.1	Wheat	mitochondrion, plastid	43.73	45.95
EER97075	Sorghum	golgi, mitochondrion, plastid	45.34	45.93
TraesCS5B01G316800.1	Wheat	mitochondrion, plastid	43.41	45.61
TraesCS5D01G322500.1	Wheat	mitochondrion, plastid	42.77	44.93
Zm00001d021242_P001	Maize	plastid	44.05	44.48
GSMUA_Achr9P00850_001	Banana	plastid	44.37	44.37
Zm00001d052497_P001	Maize	extracellular, plasma membrane, vacuole	21.86	43.87

Protein Annotations

EnsemblPlants:Solyc08g083010.2.1	EnsemblPlantsGene:Solyc08g083010.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR36383	SEG:seg	TMHMM:TMhelix	UniParc:UPI000276CAD9	UniProt:K4CPU7	MapMan:35.2

Description

No Description!

Coordinates

chr8:+:65615441..65618381

Molecular Weight (calculated)

34110.9 Da

IEP (calculated)

4.770

GRAVY (calculated)

-0.039

Length

311 amino acids

Sequence
(BLAST)

001: MKSTSISSLL PYPKILFSRR AFPPINFSST APFSGQAKFL SINCSNSSEN GEMGNLKDAL TGIVDERVEE LLKREENRVL LDGLEKATLR VEMAKKELAE
101: IERQELEAKL LKDYITQLET RTSEIAECQK DILEARAMIE EAERSLNVSG DARKRDPTDG DVVNRDEERV ESVKAASLSA IVGTLAGLPI FLSRISSSSE
201: LILPLSITFI SCALFGVTFR YAVRRDFDNF QLKSGTSAAF GVVKGLATLG GGPPLELDAA SFWSHALDGA VYVSENLLIF LFAGVGLDLC FKLRILSPFP
301: IDRSISETDK S

Best Arabidopsis Sequence Match ( AT4G24090.1 )
(BLAST)

001: MQSLSLQSLP WKPNSVTLPE INLLNPKQLT ASSSQYRRTR NWRIRSSSED NVAISSDGGD LKNSLSGIVG NQVEELLSRE ENKGLLDGLE KASLRVEIAK
101: RELEDIERQE IEAKLLQDYI NQLESRAAEI AECQQEIDAA RSMVEEAERS LSLADNSTIG SSEKGYSIDK DKERLESAKA AVIAAAVGTI AELPFALSQV
201: ASMEQLVLPL GIAFASCALF GVTFRYAVRR DLDDNHLKSG AVAAFGFVKG LGMLSRGPPL ELSWESLFSH GIDGAVLVSQ SVLIFAFASI GLDFCFKMKL
301: LRPFPSSD

Arabidopsis Description

At4g24090 [Source:UniProtKB/TrEMBL;Acc:Q5XEV6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.